Strain Fitness in Xanthobacter sp. DMC5 around GFF1114

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1113 and GFF1114 are separated by 234 nucleotidesGFF1114 and GFF1115 are separated by 4 nucleotides GFF1113 - Cellobiose 2-epimerase, at 1,197,999 to 1,199,144 GFF1113 GFF1114 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,199,379 to 1,199,963 GFF1114 GFF1115 - dTDP-glucose 4,6-dehydratase 2, at 1,199,968 to 1,201,053 GFF1115 Position (kb) 1199 1200Strain fitness (log2 ratio) -2 -1 0 1at 1198.972 kb on + strand, within GFF1113at 1199.235 kb on + strandat 1199.304 kb on + strandat 1199.372 kb on + strandat 1199.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,198,972 + GFF1113 0.85 -0.3
1,199,235 + -0.0
1,199,304 + -0.6
1,199,372 + -2.5
1,199,372 + +0.8

Or see this region's nucleotide sequence