Strain Fitness in Xanthobacter sp. DMC5 around GFF1111

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1110 and GFF1111 are separated by 983 nucleotidesGFF1111 and GFF1112 are separated by 86 nucleotides GFF1110 - hypothetical protein, at 1,192,924 to 1,194,120 GFF1110 GFF1111 - UDP-glucose 6-dehydrogenase, at 1,195,104 to 1,196,423 GFF1111 GFF1112 - Alginate biosynthesis protein AlgA, at 1,196,510 to 1,197,967 GFF1112 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -1 0 1 2at 1194.114 kb on + strandat 1194.180 kb on + strandat 1194.180 kb on + strandat 1194.181 kb on - strandat 1194.188 kb on + strandat 1194.229 kb on - strandat 1194.447 kb on + strandat 1194.946 kb on - strandat 1194.946 kb on - strandat 1196.488 kb on + strandat 1196.488 kb on + strandat 1196.498 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,194,114 + -0.1
1,194,180 + -0.4
1,194,180 + +0.3
1,194,181 - -0.8
1,194,188 + -0.1
1,194,229 - +0.8
1,194,447 + +0.7
1,194,946 - +2.1
1,194,946 - -0.4
1,196,488 + -1.0
1,196,488 + +0.3
1,196,498 + +0.3

Or see this region's nucleotide sequence