Strain Fitness in Xanthobacter sp. DMC5 around GFF1099

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1098 and GFF1099 are separated by 578 nucleotidesGFF1099 and GFF1100 are separated by 39 nucleotides GFF1098 - Disulfide bond formation protein B, at 1,178,004 to 1,178,492 GFF1098 GFF1099 - hypothetical protein, at 1,179,071 to 1,179,691 GFF1099 GFF1100 - hypothetical protein, at 1,179,731 to 1,180,741 GFF1100 Position (kb) 1179 1180Strain fitness (log2 ratio) -1 0 1at 1178.548 kb on + strandat 1178.575 kb on - strandat 1178.645 kb on + strandat 1178.646 kb on - strandat 1178.809 kb on + strandat 1178.884 kb on - strandat 1179.069 kb on + strandat 1179.709 kb on + strandat 1179.709 kb on + strandat 1179.753 kb on + strandat 1179.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,178,548 + +0.3
1,178,575 - +1.4
1,178,645 + -1.2
1,178,646 - -0.4
1,178,809 + -0.8
1,178,884 - -0.5
1,179,069 + +0.0
1,179,709 + -0.5
1,179,709 + +0.7
1,179,753 + -0.8
1,179,753 + +0.8

Or see this region's nucleotide sequence