Strain Fitness in Xanthobacter sp. DMC5 around GFF1093

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1091 and GFF1092 are separated by 57 nucleotidesGFF1092 and GFF1093 overlap by 4 nucleotidesGFF1093 and GFF1094 are separated by 176 nucleotides GFF1091 - Molybdenum-pterin-binding protein MopA, at 1,170,768 to 1,171,124 GFF1091 GFF1092 - Heme exporter protein B, at 1,171,182 to 1,171,853 GFF1092 GFF1093 - Cytochrome c biogenesis ATP-binding export protein CcmA, at 1,171,850 to 1,172,470 GFF1093 GFF1094 - Aconitate hydratase A, at 1,172,647 to 1,175,343 GFF1094 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -2 -1 0 1at 1170.897 kb on + strand, within GFF1091at 1171.029 kb on + strand, within GFF1091at 1171.030 kb on - strand, within GFF1091at 1171.153 kb on + strandat 1171.154 kb on - strandat 1172.546 kb on + strandat 1172.546 kb on + strandat 1172.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,170,897 + GFF1091 0.36 +0.5
1,171,029 + GFF1091 0.73 -0.7
1,171,030 - GFF1091 0.73 -0.3
1,171,153 + +1.2
1,171,154 - -2.1
1,172,546 + +1.0
1,172,546 + +1.0
1,172,546 + -0.2

Or see this region's nucleotide sequence