Strain Fitness in Xanthobacter sp. DMC5 around GFF1048

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1047 and GFF1048 are separated by 54 nucleotidesGFF1048 and GFF1049 are separated by 102 nucleotides GFF1047 - hypothetical protein, at 1,128,131 to 1,128,793 GFF1047 GFF1048 - Anhydro-N-acetylmuramic acid kinase, at 1,128,848 to 1,129,957 GFF1048 GFF1049 - Tyrosine--tRNA ligase, at 1,130,060 to 1,131,310 GFF1049 Position (kb) 1128 1129 1130Strain fitness (log2 ratio) -1 0 1at 1128.016 kb on + strandat 1128.849 kb on + strandat 1128.849 kb on + strandat 1128.850 kb on - strandat 1129.036 kb on - strand, within GFF1048at 1129.451 kb on + strand, within GFF1048at 1129.452 kb on - strand, within GFF1048at 1129.957 kb on + strandat 1130.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,128,016 + -0.4
1,128,849 + -0.6
1,128,849 + +1.2
1,128,850 - +0.4
1,129,036 - GFF1048 0.17 +1.3
1,129,451 + GFF1048 0.54 -0.2
1,129,452 - GFF1048 0.54 -0.5
1,129,957 + +0.6
1,130,004 + -0.0

Or see this region's nucleotide sequence