Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39620

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39615 and QEN71_RS39620 overlap by 8 nucleotidesQEN71_RS39620 and QEN71_RS39625 are separated by 59 nucleotides QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570 _RS39615 QEN71_RS39620: QEN71_RS39620 - proline/glycine betaine ABC transporter permease, at 2,277,563 to 2,278,450 _RS39620 QEN71_RS39625: QEN71_RS39625 - FAD-binding oxidoreductase, at 2,278,510 to 2,279,781 _RS39625 Position (kb) 2277 2278 2279Strain fitness (log2 ratio) -1 0 1at 2276.566 kb on + strand, within QEN71_RS39615at 2276.781 kb on - strand, within QEN71_RS39615at 2276.985 kb on - strand, within QEN71_RS39615at 2277.172 kb on + strand, within QEN71_RS39615at 2277.226 kb on + strand, within QEN71_RS39615at 2277.497 kb on + strandat 2277.497 kb on + strandat 2277.498 kb on - strandat 2277.498 kb on - strandat 2277.936 kb on + strand, within QEN71_RS39620at 2278.353 kb on + strand, within QEN71_RS39620at 2278.400 kb on - strandat 2278.400 kb on - strandat 2278.439 kb on + strandat 2278.561 kb on + strandat 2278.898 kb on + strand, within QEN71_RS39625at 2278.899 kb on - strand, within QEN71_RS39625at 2278.899 kb on - strand, within QEN71_RS39625at 2279.045 kb on + strand, within QEN71_RS39625at 2279.046 kb on - strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.050 kb on - strand, within QEN71_RS39625at 2279.052 kb on - strand, within QEN71_RS39625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,276,566 + QEN71_RS39615 0.11 -0.3
2,276,781 - QEN71_RS39615 0.30 +0.0
2,276,985 - QEN71_RS39615 0.48 -0.4
2,277,172 + QEN71_RS39615 0.65 +1.0
2,277,226 + QEN71_RS39615 0.69 +0.0
2,277,497 + -1.2
2,277,497 + +0.6
2,277,498 - +0.2
2,277,498 - +0.6
2,277,936 + QEN71_RS39620 0.42 +1.0
2,278,353 + QEN71_RS39620 0.89 +0.7
2,278,400 - +0.4
2,278,400 - +0.0
2,278,439 + -0.6
2,278,561 + -0.4
2,278,898 + QEN71_RS39625 0.31 -1.6
2,278,899 - QEN71_RS39625 0.31 -0.8
2,278,899 - QEN71_RS39625 0.31 -0.1
2,279,045 + QEN71_RS39625 0.42 +0.6
2,279,046 - QEN71_RS39625 0.42 +0.6
2,279,049 + QEN71_RS39625 0.42 -0.7
2,279,049 + QEN71_RS39625 0.42 +0.4
2,279,049 + QEN71_RS39625 0.42 +0.7
2,279,049 + QEN71_RS39625 0.42 +0.6
2,279,049 + QEN71_RS39625 0.42 -0.3
2,279,050 - QEN71_RS39625 0.42 +1.0
2,279,052 - QEN71_RS39625 0.43 -0.4

Or see this region's nucleotide sequence