Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39615

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39610 and QEN71_RS39615 are separated by 206 nucleotidesQEN71_RS39615 and QEN71_RS39620 overlap by 8 nucleotidesQEN71_RS39620 and QEN71_RS39625 are separated by 59 nucleotides QEN71_RS39610: QEN71_RS39610 - glycine betaine ABC transporter substrate-binding protein, at 2,275,232 to 2,276,236 _RS39610 QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570 _RS39615 QEN71_RS39620: QEN71_RS39620 - proline/glycine betaine ABC transporter permease, at 2,277,563 to 2,278,450 _RS39620 QEN71_RS39625: QEN71_RS39625 - FAD-binding oxidoreductase, at 2,278,510 to 2,279,781 _RS39625 Position (kb) 2276 2277 2278Strain fitness (log2 ratio) -2 -1 0 1at 2275.635 kb on + strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.770 kb on + strand, within QEN71_RS39610at 2276.444 kb on + strandat 2276.566 kb on + strand, within QEN71_RS39615at 2276.781 kb on - strand, within QEN71_RS39615at 2276.985 kb on - strand, within QEN71_RS39615at 2277.172 kb on + strand, within QEN71_RS39615at 2277.226 kb on + strand, within QEN71_RS39615at 2277.497 kb on + strandat 2277.497 kb on + strandat 2277.498 kb on - strandat 2277.498 kb on - strandat 2277.936 kb on + strand, within QEN71_RS39620at 2278.353 kb on + strand, within QEN71_RS39620at 2278.400 kb on - strandat 2278.400 kb on - strandat 2278.439 kb on + strandat 2278.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,275,635 + QEN71_RS39610 0.40 -0.7
2,275,636 - QEN71_RS39610 0.40 +0.2
2,275,636 - QEN71_RS39610 0.40 +0.1
2,275,723 - QEN71_RS39610 0.49 +1.2
2,275,723 - QEN71_RS39610 0.49 -0.2
2,275,770 + QEN71_RS39610 0.54 +0.9
2,276,444 + -1.9
2,276,566 + QEN71_RS39615 0.11 -0.3
2,276,781 - QEN71_RS39615 0.30 +0.0
2,276,985 - QEN71_RS39615 0.48 -0.4
2,277,172 + QEN71_RS39615 0.65 +1.0
2,277,226 + QEN71_RS39615 0.69 +0.0
2,277,497 + -1.2
2,277,497 + +0.6
2,277,498 - +0.2
2,277,498 - +0.6
2,277,936 + QEN71_RS39620 0.42 +1.0
2,278,353 + QEN71_RS39620 0.89 +0.7
2,278,400 - +0.4
2,278,400 - +0.0
2,278,439 + -0.6
2,278,561 + -0.4

Or see this region's nucleotide sequence