Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39600

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39595 and QEN71_RS39600 are separated by 136 nucleotidesQEN71_RS39600 and QEN71_RS39605 are separated by 166 nucleotides QEN71_RS39595: QEN71_RS39595 - DMT family transporter, at 2,271,738 to 2,272,646 _RS39595 QEN71_RS39600: QEN71_RS39600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,272,783 to 2,274,039 _RS39600 QEN71_RS39605: QEN71_RS39605 - LysR substrate-binding domain-containing protein, at 2,274,206 to 2,275,123 _RS39605 Position (kb) 2272 2273 2274 2275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2271.943 kb on + strand, within QEN71_RS39595at 2271.943 kb on + strand, within QEN71_RS39595at 2271.944 kb on - strand, within QEN71_RS39595at 2271.946 kb on + strand, within QEN71_RS39595at 2271.946 kb on + strand, within QEN71_RS39595at 2271.947 kb on - strand, within QEN71_RS39595at 2271.947 kb on - strand, within QEN71_RS39595at 2271.949 kb on + strand, within QEN71_RS39595at 2271.949 kb on + strand, within QEN71_RS39595at 2271.949 kb on + strand, within QEN71_RS39595at 2271.950 kb on - strand, within QEN71_RS39595at 2271.950 kb on - strand, within QEN71_RS39595at 2272.095 kb on - strand, within QEN71_RS39595at 2272.095 kb on - strand, within QEN71_RS39595at 2272.095 kb on - strand, within QEN71_RS39595at 2272.134 kb on + strand, within QEN71_RS39595at 2272.135 kb on - strand, within QEN71_RS39595at 2272.135 kb on - strand, within QEN71_RS39595at 2272.135 kb on - strand, within QEN71_RS39595at 2272.135 kb on - strand, within QEN71_RS39595at 2272.144 kb on + strand, within QEN71_RS39595at 2272.144 kb on + strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.145 kb on - strand, within QEN71_RS39595at 2272.148 kb on + strand, within QEN71_RS39595at 2272.149 kb on - strand, within QEN71_RS39595at 2272.356 kb on + strand, within QEN71_RS39595at 2272.414 kb on + strand, within QEN71_RS39595at 2272.414 kb on + strand, within QEN71_RS39595at 2272.415 kb on - strand, within QEN71_RS39595at 2272.415 kb on - strand, within QEN71_RS39595at 2272.585 kb on + strandat 2272.585 kb on + strandat 2272.586 kb on - strandat 2272.639 kb on - strandat 2272.639 kb on - strandat 2272.736 kb on + strandat 2272.772 kb on + strandat 2272.772 kb on + strandat 2272.773 kb on - strandat 2272.815 kb on - strandat 2272.836 kb on + strandat 2272.838 kb on + strandat 2272.860 kb on - strandat 2272.873 kb on - strandat 2272.874 kb on + strandat 2272.875 kb on - strandat 2272.985 kb on - strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.106 kb on + strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.107 kb on - strand, within QEN71_RS39600at 2273.267 kb on - strand, within QEN71_RS39600at 2273.316 kb on + strand, within QEN71_RS39600at 2273.318 kb on + strand, within QEN71_RS39600at 2273.426 kb on + strand, within QEN71_RS39600at 2273.517 kb on - strand, within QEN71_RS39600at 2273.517 kb on - strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.593 kb on + strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.594 kb on - strand, within QEN71_RS39600at 2273.700 kb on - strand, within QEN71_RS39600at 2274.045 kb on - strandat 2274.134 kb on - strandat 2274.147 kb on + strandat 2274.151 kb on - strandat 2274.162 kb on + strandat 2274.294 kb on + strandat 2274.295 kb on - strandat 2274.295 kb on - strandat 2274.333 kb on - strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.447 kb on + strand, within QEN71_RS39605at 2274.576 kb on + strand, within QEN71_RS39605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,271,943 + QEN71_RS39595 0.23 -0.9
2,271,943 + QEN71_RS39595 0.23 +1.2
2,271,944 - QEN71_RS39595 0.23 -0.3
2,271,946 + QEN71_RS39595 0.23 -0.8
2,271,946 + QEN71_RS39595 0.23 -0.2
2,271,947 - QEN71_RS39595 0.23 +1.3
2,271,947 - QEN71_RS39595 0.23 -0.9
2,271,949 + QEN71_RS39595 0.23 -1.4
2,271,949 + QEN71_RS39595 0.23 -1.2
2,271,949 + QEN71_RS39595 0.23 -0.3
2,271,950 - QEN71_RS39595 0.23 -0.2
2,271,950 - QEN71_RS39595 0.23 +2.3
2,272,095 - QEN71_RS39595 0.39 +2.2
2,272,095 - QEN71_RS39595 0.39 +2.3
2,272,095 - QEN71_RS39595 0.39 -0.7
2,272,134 + QEN71_RS39595 0.44 +0.0
2,272,135 - QEN71_RS39595 0.44 -0.4
2,272,135 - QEN71_RS39595 0.44 +1.1
2,272,135 - QEN71_RS39595 0.44 -0.9
2,272,135 - QEN71_RS39595 0.44 +1.0
2,272,144 + QEN71_RS39595 0.45 -0.6
2,272,144 + QEN71_RS39595 0.45 +0.0
2,272,145 - QEN71_RS39595 0.45 -0.3
2,272,145 - QEN71_RS39595 0.45 +0.4
2,272,145 - QEN71_RS39595 0.45 +0.6
2,272,145 - QEN71_RS39595 0.45 +0.0
2,272,145 - QEN71_RS39595 0.45 -0.7
2,272,145 - QEN71_RS39595 0.45 +0.6
2,272,148 + QEN71_RS39595 0.45 -0.2
2,272,149 - QEN71_RS39595 0.45 +0.0
2,272,356 + QEN71_RS39595 0.68 +1.0
2,272,414 + QEN71_RS39595 0.74 -0.7
2,272,414 + QEN71_RS39595 0.74 -0.3
2,272,415 - QEN71_RS39595 0.74 -0.3
2,272,415 - QEN71_RS39595 0.74 -1.0
2,272,585 + -0.3
2,272,585 + +0.2
2,272,586 - -1.0
2,272,639 - +1.6
2,272,639 - +0.2
2,272,736 + -0.3
2,272,772 + +1.4
2,272,772 + -0.1
2,272,773 - -1.6
2,272,815 - -1.2
2,272,836 + +0.6
2,272,838 + -1.1
2,272,860 - -2.0
2,272,873 - -0.3
2,272,874 + -1.9
2,272,875 - +0.5
2,272,985 - QEN71_RS39600 0.16 +0.3
2,273,106 + QEN71_RS39600 0.26 -0.5
2,273,106 + QEN71_RS39600 0.26 -0.8
2,273,106 + QEN71_RS39600 0.26 +0.2
2,273,106 + QEN71_RS39600 0.26 -0.2
2,273,106 + QEN71_RS39600 0.26 -0.1
2,273,106 + QEN71_RS39600 0.26 +1.0
2,273,107 - QEN71_RS39600 0.26 -2.9
2,273,107 - QEN71_RS39600 0.26 -0.8
2,273,107 - QEN71_RS39600 0.26 -0.3
2,273,107 - QEN71_RS39600 0.26 +0.1
2,273,107 - QEN71_RS39600 0.26 -0.8
2,273,107 - QEN71_RS39600 0.26 +0.6
2,273,107 - QEN71_RS39600 0.26 +0.7
2,273,267 - QEN71_RS39600 0.39 -0.3
2,273,316 + QEN71_RS39600 0.42 +1.4
2,273,318 + QEN71_RS39600 0.43 -0.6
2,273,426 + QEN71_RS39600 0.51 +1.5
2,273,517 - QEN71_RS39600 0.58 -0.4
2,273,517 - QEN71_RS39600 0.58 +0.8
2,273,593 + QEN71_RS39600 0.64 +0.3
2,273,593 + QEN71_RS39600 0.64 -1.2
2,273,593 + QEN71_RS39600 0.64 +0.1
2,273,593 + QEN71_RS39600 0.64 +0.8
2,273,594 - QEN71_RS39600 0.65 -0.1
2,273,594 - QEN71_RS39600 0.65 -0.4
2,273,594 - QEN71_RS39600 0.65 -0.3
2,273,594 - QEN71_RS39600 0.65 +0.1
2,273,594 - QEN71_RS39600 0.65 -0.4
2,273,594 - QEN71_RS39600 0.65 +0.9
2,273,700 - QEN71_RS39600 0.73 -0.9
2,274,045 - -1.3
2,274,134 - -1.6
2,274,147 + +0.0
2,274,151 - -0.4
2,274,162 + -0.3
2,274,294 + +1.0
2,274,295 - -0.6
2,274,295 - +0.1
2,274,333 - QEN71_RS39605 0.14 -0.2
2,274,436 + QEN71_RS39605 0.25 -0.8
2,274,436 + QEN71_RS39605 0.25 -0.9
2,274,436 + QEN71_RS39605 0.25 -0.6
2,274,447 + QEN71_RS39605 0.26 +0.2
2,274,576 + QEN71_RS39605 0.40 +0.0

Or see this region's nucleotide sequence