Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38575

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38565 and QEN71_RS38570 are separated by 80 nucleotidesQEN71_RS38570 and QEN71_RS38575 are separated by 182 nucleotidesQEN71_RS38575 and QEN71_RS38580 are separated by 49 nucleotides QEN71_RS38565: QEN71_RS38565 - LysR family transcriptional regulator, at 2,036,711 to 2,037,634 _RS38565 QEN71_RS38570: QEN71_RS38570 - TetR/AcrR family transcriptional regulator, at 2,037,715 to 2,038,278 _RS38570 QEN71_RS38575: QEN71_RS38575 - organic hydroperoxide resistance protein, at 2,038,461 to 2,038,886 _RS38575 QEN71_RS38580: QEN71_RS38580 - alpha/beta hydrolase, at 2,038,936 to 2,039,964 _RS38580 Position (kb) 2038 2039Strain fitness (log2 ratio) -2 -1 0 1at 2037.561 kb on - strandat 2037.561 kb on - strandat 2037.563 kb on + strandat 2037.563 kb on + strandat 2037.564 kb on - strandat 2037.574 kb on + strandat 2037.574 kb on + strandat 2037.575 kb on - strandat 2037.633 kb on - strandat 2037.964 kb on + strand, within QEN71_RS38570at 2038.193 kb on - strand, within QEN71_RS38570at 2038.277 kb on - strandat 2038.282 kb on + strandat 2038.282 kb on + strandat 2038.283 kb on - strandat 2038.894 kb on - strandat 2038.905 kb on + strandat 2039.088 kb on + strand, within QEN71_RS38580at 2039.411 kb on - strand, within QEN71_RS38580at 2039.617 kb on + strand, within QEN71_RS38580at 2039.618 kb on - strand, within QEN71_RS38580at 2039.618 kb on - strand, within QEN71_RS38580at 2039.705 kb on - strand, within QEN71_RS38580at 2039.806 kb on + strand, within QEN71_RS38580at 2039.807 kb on - strand, within QEN71_RS38580at 2039.855 kb on - strand, within QEN71_RS38580at 2039.855 kb on - strand, within QEN71_RS38580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,037,561 - +1.0
2,037,561 - -0.2
2,037,563 + -0.2
2,037,563 + -0.1
2,037,564 - +0.3
2,037,574 + -0.5
2,037,574 + -0.9
2,037,575 - +0.2
2,037,633 - -0.4
2,037,964 + QEN71_RS38570 0.44 -1.7
2,038,193 - QEN71_RS38570 0.85 -1.0
2,038,277 - -1.2
2,038,282 + -0.3
2,038,282 + -0.3
2,038,283 - +0.0
2,038,894 - -1.6
2,038,905 + -1.2
2,039,088 + QEN71_RS38580 0.15 -0.1
2,039,411 - QEN71_RS38580 0.46 -0.1
2,039,617 + QEN71_RS38580 0.66 -0.8
2,039,618 - QEN71_RS38580 0.66 -0.1
2,039,618 - QEN71_RS38580 0.66 -0.3
2,039,705 - QEN71_RS38580 0.75 +0.0
2,039,806 + QEN71_RS38580 0.85 -1.8
2,039,807 - QEN71_RS38580 0.85 +0.3
2,039,855 - QEN71_RS38580 0.89 -0.3
2,039,855 - QEN71_RS38580 0.89 -0.9

Or see this region's nucleotide sequence