Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36755

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36745 and QEN71_RS36750 are separated by 306 nucleotidesQEN71_RS36750 and QEN71_RS36755 are separated by 5 nucleotidesQEN71_RS36755 and QEN71_RS36760 are separated by 90 nucleotides QEN71_RS36745: QEN71_RS36745 - hypothetical protein, at 1,624,592 to 1,625,299 _RS36745 QEN71_RS36750: QEN71_RS36750 - HrpB1 family type III secretion system apparatus protein, at 1,625,606 to 1,626,064 _RS36750 QEN71_RS36755: QEN71_RS36755 - DUF3455 domain-containing protein, at 1,626,070 to 1,626,696 _RS36755 QEN71_RS36760: QEN71_RS36760 - NAD(P)/FAD-dependent oxidoreductase, at 1,626,787 to 1,628,034 _RS36760 Position (kb) 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1625.257 kb on + strandat 1625.257 kb on + strandat 1625.257 kb on + strandat 1625.258 kb on - strandat 1625.258 kb on - strandat 1625.259 kb on + strandat 1625.259 kb on + strandat 1625.260 kb on - strandat 1625.260 kb on - strandat 1625.260 kb on - strandat 1625.379 kb on + strandat 1625.380 kb on - strandat 1625.380 kb on - strandat 1625.859 kb on - strand, within QEN71_RS36750at 1625.873 kb on + strand, within QEN71_RS36750at 1625.873 kb on + strand, within QEN71_RS36750at 1625.874 kb on - strand, within QEN71_RS36750at 1626.250 kb on + strand, within QEN71_RS36755at 1626.251 kb on - strand, within QEN71_RS36755at 1626.301 kb on + strand, within QEN71_RS36755at 1626.301 kb on + strand, within QEN71_RS36755at 1626.302 kb on - strand, within QEN71_RS36755at 1626.394 kb on + strand, within QEN71_RS36755at 1626.406 kb on + strand, within QEN71_RS36755at 1626.407 kb on - strand, within QEN71_RS36755at 1626.546 kb on + strand, within QEN71_RS36755at 1626.546 kb on + strand, within QEN71_RS36755at 1626.611 kb on - strand, within QEN71_RS36755at 1626.622 kb on + strand, within QEN71_RS36755at 1626.622 kb on + strand, within QEN71_RS36755at 1626.623 kb on - strand, within QEN71_RS36755at 1626.623 kb on - strand, within QEN71_RS36755at 1626.632 kb on - strand, within QEN71_RS36755at 1626.712 kb on - strandat 1626.712 kb on - strandat 1626.929 kb on - strand, within QEN71_RS36760at 1626.952 kb on + strand, within QEN71_RS36760at 1626.953 kb on - strand, within QEN71_RS36760at 1626.953 kb on - strand, within QEN71_RS36760at 1627.174 kb on + strand, within QEN71_RS36760at 1627.175 kb on - strand, within QEN71_RS36760at 1627.175 kb on - strand, within QEN71_RS36760at 1627.377 kb on - strand, within QEN71_RS36760at 1627.531 kb on - strand, within QEN71_RS36760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,625,257 + +1.0
1,625,257 + -0.4
1,625,257 + -0.0
1,625,258 - -0.1
1,625,258 - +0.3
1,625,259 + -0.2
1,625,259 + +0.2
1,625,260 - -0.2
1,625,260 - +0.6
1,625,260 - -1.4
1,625,379 + -0.1
1,625,380 - -0.7
1,625,380 - -0.3
1,625,859 - QEN71_RS36750 0.55 -0.1
1,625,873 + QEN71_RS36750 0.58 -0.6
1,625,873 + QEN71_RS36750 0.58 +0.4
1,625,874 - QEN71_RS36750 0.58 -0.7
1,626,250 + QEN71_RS36755 0.29 +0.0
1,626,251 - QEN71_RS36755 0.29 -1.0
1,626,301 + QEN71_RS36755 0.37 +0.2
1,626,301 + QEN71_RS36755 0.37 -0.1
1,626,302 - QEN71_RS36755 0.37 +0.7
1,626,394 + QEN71_RS36755 0.52 +0.7
1,626,406 + QEN71_RS36755 0.54 -0.2
1,626,407 - QEN71_RS36755 0.54 -0.1
1,626,546 + QEN71_RS36755 0.76 -0.0
1,626,546 + QEN71_RS36755 0.76 -0.7
1,626,611 - QEN71_RS36755 0.86 -0.5
1,626,622 + QEN71_RS36755 0.88 -0.9
1,626,622 + QEN71_RS36755 0.88 -0.8
1,626,623 - QEN71_RS36755 0.88 -2.0
1,626,623 - QEN71_RS36755 0.88 -0.2
1,626,632 - QEN71_RS36755 0.90 -0.5
1,626,712 - +0.7
1,626,712 - -1.5
1,626,929 - QEN71_RS36760 0.11 -0.1
1,626,952 + QEN71_RS36760 0.13 -0.3
1,626,953 - QEN71_RS36760 0.13 +0.7
1,626,953 - QEN71_RS36760 0.13 +0.4
1,627,174 + QEN71_RS36760 0.31 -0.0
1,627,175 - QEN71_RS36760 0.31 -0.3
1,627,175 - QEN71_RS36760 0.31 +1.0
1,627,377 - QEN71_RS36760 0.47 +0.2
1,627,531 - QEN71_RS36760 0.60 -0.1

Or see this region's nucleotide sequence