Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29015

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29010 and QEN71_RS29015 are separated by 73 nucleotidesQEN71_RS29015 and QEN71_RS29020 are separated by 69 nucleotides QEN71_RS29010: QEN71_RS29010 - chemotaxis protein CheA, at 6,430,684 to 6,432,999 _RS29010 QEN71_RS29015: QEN71_RS29015 - response regulator, at 6,433,073 to 6,433,435 _RS29015 QEN71_RS29020: QEN71_RS29020 - flagellar motor protein MotB, at 6,433,505 to 6,434,617 _RS29020 Position (kb) 6433 6434Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6432.148 kb on + strand, within QEN71_RS29010at 6432.148 kb on + strand, within QEN71_RS29010at 6432.148 kb on + strand, within QEN71_RS29010at 6432.148 kb on + strand, within QEN71_RS29010at 6432.148 kb on + strand, within QEN71_RS29010at 6432.149 kb on - strand, within QEN71_RS29010at 6432.149 kb on - strand, within QEN71_RS29010at 6432.149 kb on - strand, within QEN71_RS29010at 6432.149 kb on - strand, within QEN71_RS29010at 6432.149 kb on - strand, within QEN71_RS29010at 6432.412 kb on + strand, within QEN71_RS29010at 6432.413 kb on - strand, within QEN71_RS29010at 6432.417 kb on + strand, within QEN71_RS29010at 6432.418 kb on - strand, within QEN71_RS29010at 6432.418 kb on - strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.975 kb on - strandat 6433.029 kb on + strandat 6433.029 kb on + strandat 6433.029 kb on + strandat 6433.030 kb on - strandat 6433.030 kb on - strandat 6433.030 kb on - strandat 6433.045 kb on - strandat 6433.357 kb on - strand, within QEN71_RS29015at 6433.664 kb on - strand, within QEN71_RS29020at 6433.664 kb on - strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.956 kb on + strand, within QEN71_RS29020at 6433.957 kb on - strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.095 kb on + strand, within QEN71_RS29020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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6,432,148 + QEN71_RS29010 0.63 -0.1
6,432,148 + QEN71_RS29010 0.63 -0.8
6,432,148 + QEN71_RS29010 0.63 -2.5
6,432,148 + QEN71_RS29010 0.63 +0.1
6,432,148 + QEN71_RS29010 0.63 +0.2
6,432,149 - QEN71_RS29010 0.63 +0.1
6,432,149 - QEN71_RS29010 0.63 +1.2
6,432,149 - QEN71_RS29010 0.63 -0.7
6,432,149 - QEN71_RS29010 0.63 +1.0
6,432,149 - QEN71_RS29010 0.63 -1.4
6,432,412 + QEN71_RS29010 0.75 +1.1
6,432,413 - QEN71_RS29010 0.75 +0.9
6,432,417 + QEN71_RS29010 0.75 -0.0
6,432,418 - QEN71_RS29010 0.75 -0.5
6,432,418 - QEN71_RS29010 0.75 +0.3
6,432,505 + QEN71_RS29010 0.79 -0.0
6,432,505 + QEN71_RS29010 0.79 +1.0
6,432,505 + QEN71_RS29010 0.79 +0.4
6,432,505 + QEN71_RS29010 0.79 +0.1
6,432,505 + QEN71_RS29010 0.79 -0.0
6,432,505 + QEN71_RS29010 0.79 -0.3
6,432,505 + QEN71_RS29010 0.79 +0.1
6,432,505 + QEN71_RS29010 0.79 +0.1
6,432,505 + QEN71_RS29010 0.79 +0.6
6,432,506 - QEN71_RS29010 0.79 +0.1
6,432,506 - QEN71_RS29010 0.79 -0.0
6,432,506 - QEN71_RS29010 0.79 -0.7
6,432,506 - QEN71_RS29010 0.79 -1.2
6,432,975 - -0.4
6,433,029 + +1.7
6,433,029 + +0.2
6,433,029 + +1.6
6,433,030 - -0.3
6,433,030 - +0.5
6,433,030 - +1.7
6,433,045 - +0.0
6,433,357 - QEN71_RS29015 0.78 +0.6
6,433,664 - QEN71_RS29020 0.14 +0.5
6,433,664 - QEN71_RS29020 0.14 +0.6
6,433,935 + QEN71_RS29020 0.39 +1.7
6,433,935 + QEN71_RS29020 0.39 +1.1
6,433,935 + QEN71_RS29020 0.39 +0.9
6,433,935 + QEN71_RS29020 0.39 +0.4
6,433,956 + QEN71_RS29020 0.41 -0.4
6,433,957 - QEN71_RS29020 0.41 +0.8
6,434,046 + QEN71_RS29020 0.49 +1.7
6,434,046 + QEN71_RS29020 0.49 +0.9
6,434,046 + QEN71_RS29020 0.49 +0.7
6,434,046 + QEN71_RS29020 0.49 +0.5
6,434,046 + QEN71_RS29020 0.49 -0.8
6,434,046 + QEN71_RS29020 0.49 -0.6
6,434,046 + QEN71_RS29020 0.49 +0.8
6,434,046 + QEN71_RS29020 0.49 +3.1
6,434,046 + QEN71_RS29020 0.49 +1.4
6,434,046 + QEN71_RS29020 0.49 +0.9
6,434,046 + QEN71_RS29020 0.49 +0.8
6,434,047 - QEN71_RS29020 0.49 -0.0
6,434,047 - QEN71_RS29020 0.49 +0.8
6,434,047 - QEN71_RS29020 0.49 +0.9
6,434,047 - QEN71_RS29020 0.49 +1.0
6,434,047 - QEN71_RS29020 0.49 +0.6
6,434,047 - QEN71_RS29020 0.49 +0.7
6,434,047 - QEN71_RS29020 0.49 -0.4
6,434,047 - QEN71_RS29020 0.49 +1.7
6,434,047 - QEN71_RS29020 0.49 +1.2
6,434,047 - QEN71_RS29020 0.49 +2.0
6,434,047 - QEN71_RS29020 0.49 +0.2
6,434,047 - QEN71_RS29020 0.49 +0.9
6,434,095 + QEN71_RS29020 0.53 +1.2

Or see this region's nucleotide sequence