Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08255

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08250 and QEN71_RS08255 overlap by 4 nucleotidesQEN71_RS08255 and QEN71_RS08260 are separated by 36 nucleotides QEN71_RS08250: QEN71_RS08250 - acyl-CoA dehydrogenase family protein, at 1,830,381 to 1,831,535 _RS08250 QEN71_RS08255: QEN71_RS08255 - MaoC family dehydratase, at 1,831,532 to 1,831,987 _RS08255 QEN71_RS08260: QEN71_RS08260 - SDR family NAD(P)-dependent oxidoreductase, at 1,832,024 to 1,832,923 _RS08260 Position (kb) 1831 1832Strain fitness (log2 ratio) -1 0 1at 1830.595 kb on + strand, within QEN71_RS08250at 1830.596 kb on - strand, within QEN71_RS08250at 1830.717 kb on + strand, within QEN71_RS08250at 1830.717 kb on + strand, within QEN71_RS08250at 1830.753 kb on + strand, within QEN71_RS08250at 1830.753 kb on + strand, within QEN71_RS08250at 1830.754 kb on - strand, within QEN71_RS08250at 1830.756 kb on - strand, within QEN71_RS08250at 1831.422 kb on + strandat 1831.426 kb on - strandat 1831.426 kb on - strandat 1831.515 kb on - strandat 1832.029 kb on + strandat 1832.252 kb on + strand, within QEN71_RS08260at 1832.253 kb on - strand, within QEN71_RS08260at 1832.493 kb on - strand, within QEN71_RS08260at 1832.596 kb on + strand, within QEN71_RS08260at 1832.596 kb on + strand, within QEN71_RS08260at 1832.663 kb on - strand, within QEN71_RS08260at 1832.871 kb on - strandat 1832.981 kb on + strandat 1832.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,830,595 + QEN71_RS08250 0.19 -1.6
1,830,596 - QEN71_RS08250 0.19 -0.1
1,830,717 + QEN71_RS08250 0.29 +1.2
1,830,717 + QEN71_RS08250 0.29 -0.5
1,830,753 + QEN71_RS08250 0.32 +1.3
1,830,753 + QEN71_RS08250 0.32 +0.2
1,830,754 - QEN71_RS08250 0.32 +1.1
1,830,756 - QEN71_RS08250 0.32 -0.6
1,831,422 + -1.3
1,831,426 - +0.7
1,831,426 - +1.3
1,831,515 - -0.6
1,832,029 + -0.0
1,832,252 + QEN71_RS08260 0.25 -0.2
1,832,253 - QEN71_RS08260 0.25 -0.6
1,832,493 - QEN71_RS08260 0.52 +0.3
1,832,596 + QEN71_RS08260 0.64 -0.3
1,832,596 + QEN71_RS08260 0.64 -0.4
1,832,663 - QEN71_RS08260 0.71 -0.6
1,832,871 - +0.6
1,832,981 + -0.7
1,832,981 + +0.2

Or see this region's nucleotide sequence