Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05705

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05700 and QEN71_RS05705 are separated by 306 nucleotidesQEN71_RS05705 and QEN71_RS05710 are separated by 80 nucleotides QEN71_RS05700: QEN71_RS05700 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,261,439 to 1,262,296 _RS05700 QEN71_RS05705: QEN71_RS05705 - DUF2950 domain-containing protein, at 1,262,603 to 1,263,517 _RS05705 QEN71_RS05710: QEN71_RS05710 - DUF3300 domain-containing protein, at 1,263,598 to 1,264,926 _RS05710 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.520 kb on - strandat 1262.521 kb on + strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.522 kb on - strandat 1262.587 kb on + strandat 1262.587 kb on + strandat 1262.587 kb on + strandat 1262.587 kb on + strandat 1262.587 kb on + strandat 1262.588 kb on - strandat 1262.588 kb on - strandat 1262.588 kb on - strandat 1262.588 kb on - strandat 1262.694 kb on + strandat 1262.694 kb on + strandat 1262.695 kb on - strand, within QEN71_RS05705at 1262.695 kb on - strand, within QEN71_RS05705at 1262.695 kb on - strand, within QEN71_RS05705at 1262.695 kb on - strand, within QEN71_RS05705at 1262.695 kb on - strand, within QEN71_RS05705at 1262.802 kb on + strand, within QEN71_RS05705at 1262.802 kb on + strand, within QEN71_RS05705at 1262.802 kb on + strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.803 kb on - strand, within QEN71_RS05705at 1262.859 kb on + strand, within QEN71_RS05705at 1262.860 kb on - strand, within QEN71_RS05705at 1262.860 kb on - strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.865 kb on + strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.866 kb on - strand, within QEN71_RS05705at 1262.868 kb on + strand, within QEN71_RS05705at 1262.868 kb on + strand, within QEN71_RS05705at 1262.869 kb on - strand, within QEN71_RS05705at 1262.869 kb on - strand, within QEN71_RS05705at 1262.869 kb on - strand, within QEN71_RS05705at 1262.869 kb on - strand, within QEN71_RS05705at 1262.955 kb on + strand, within QEN71_RS05705at 1263.000 kb on + strand, within QEN71_RS05705at 1263.000 kb on + strand, within QEN71_RS05705at 1263.000 kb on + strand, within QEN71_RS05705at 1263.001 kb on - strand, within QEN71_RS05705at 1263.042 kb on + strand, within QEN71_RS05705at 1263.042 kb on + strand, within QEN71_RS05705at 1263.042 kb on + strand, within QEN71_RS05705at 1263.043 kb on - strand, within QEN71_RS05705at 1263.043 kb on - strand, within QEN71_RS05705at 1263.043 kb on - strand, within QEN71_RS05705at 1263.043 kb on - strand, within QEN71_RS05705at 1263.043 kb on - strand, within QEN71_RS05705at 1263.238 kb on + strand, within QEN71_RS05705at 1263.238 kb on + strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.239 kb on - strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.273 kb on + strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.274 kb on - strand, within QEN71_RS05705at 1263.277 kb on + strand, within QEN71_RS05705at 1263.277 kb on + strand, within QEN71_RS05705at 1263.278 kb on - strand, within QEN71_RS05705at 1263.278 kb on - strand, within QEN71_RS05705at 1263.278 kb on - strand, within QEN71_RS05705at 1263.278 kb on - strand, within QEN71_RS05705at 1263.309 kb on + strand, within QEN71_RS05705at 1263.310 kb on - strand, within QEN71_RS05705at 1263.310 kb on - strand, within QEN71_RS05705at 1263.310 kb on - strand, within QEN71_RS05705at 1263.310 kb on - strand, within QEN71_RS05705at 1263.310 kb on - strand, within QEN71_RS05705at 1263.319 kb on - strand, within QEN71_RS05705at 1263.319 kb on - strand, within QEN71_RS05705at 1263.319 kb on - strand, within QEN71_RS05705at 1263.319 kb on - strand, within QEN71_RS05705at 1263.409 kb on - strand, within QEN71_RS05705at 1263.409 kb on - strand, within QEN71_RS05705at 1263.888 kb on + strand, within QEN71_RS05710at 1264.025 kb on + strand, within QEN71_RS05710at 1264.175 kb on + strand, within QEN71_RS05710at 1264.176 kb on - strand, within QEN71_RS05710at 1264.176 kb on - strand, within QEN71_RS05710at 1264.176 kb on - strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.316 kb on + strand, within QEN71_RS05710at 1264.317 kb on - strand, within QEN71_RS05710at 1264.317 kb on - strand, within QEN71_RS05710at 1264.317 kb on - strand, within QEN71_RS05710at 1264.337 kb on + strand, within QEN71_RS05710at 1264.352 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.370 kb on + strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.371 kb on - strand, within QEN71_RS05710at 1264.382 kb on + strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.383 kb on - strand, within QEN71_RS05710at 1264.498 kb on + strand, within QEN71_RS05710at 1264.498 kb on + strand, within QEN71_RS05710at 1264.499 kb on - strand, within QEN71_RS05710at 1264.499 kb on - strand, within QEN71_RS05710at 1264.499 kb on - strand, within QEN71_RS05710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,262,520 - -0.4
1,262,520 - +0.6
1,262,520 - +0.7
1,262,520 - +0.1
1,262,520 - -0.0
1,262,520 - -0.4
1,262,520 - +0.4
1,262,520 - -0.3
1,262,520 - -0.7
1,262,521 + -0.6
1,262,522 - +2.9
1,262,522 - +0.4
1,262,522 - +1.0
1,262,522 - +1.4
1,262,522 - -0.1
1,262,522 - +0.6
1,262,522 - +0.2
1,262,522 - +0.5
1,262,587 + -0.3
1,262,587 + -1.6
1,262,587 + -0.2
1,262,587 + -0.3
1,262,587 + -0.0
1,262,588 - -0.1
1,262,588 - -1.6
1,262,588 - -2.1
1,262,588 - -1.7
1,262,694 + +0.9
1,262,694 + +0.7
1,262,695 - QEN71_RS05705 0.10 -0.7
1,262,695 - QEN71_RS05705 0.10 -0.3
1,262,695 - QEN71_RS05705 0.10 +0.1
1,262,695 - QEN71_RS05705 0.10 -0.6
1,262,695 - QEN71_RS05705 0.10 +2.6
1,262,802 + QEN71_RS05705 0.22 -0.3
1,262,802 + QEN71_RS05705 0.22 -0.9
1,262,802 + QEN71_RS05705 0.22 -1.2
1,262,803 - QEN71_RS05705 0.22 +1.0
1,262,803 - QEN71_RS05705 0.22 +0.1
1,262,803 - QEN71_RS05705 0.22 -0.9
1,262,803 - QEN71_RS05705 0.22 -0.1
1,262,803 - QEN71_RS05705 0.22 +0.1
1,262,803 - QEN71_RS05705 0.22 -0.1
1,262,859 + QEN71_RS05705 0.28 -0.1
1,262,860 - QEN71_RS05705 0.28 -0.4
1,262,860 - QEN71_RS05705 0.28 -0.7
1,262,865 + QEN71_RS05705 0.29 -0.8
1,262,865 + QEN71_RS05705 0.29 -0.2
1,262,865 + QEN71_RS05705 0.29 +0.5
1,262,865 + QEN71_RS05705 0.29 -0.3
1,262,865 + QEN71_RS05705 0.29 +0.8
1,262,865 + QEN71_RS05705 0.29 -0.4
1,262,866 - QEN71_RS05705 0.29 -0.1
1,262,866 - QEN71_RS05705 0.29 +0.1
1,262,866 - QEN71_RS05705 0.29 -1.1
1,262,866 - QEN71_RS05705 0.29 +0.6
1,262,866 - QEN71_RS05705 0.29 +0.6
1,262,866 - QEN71_RS05705 0.29 -1.7
1,262,866 - QEN71_RS05705 0.29 -1.5
1,262,866 - QEN71_RS05705 0.29 -0.5
1,262,866 - QEN71_RS05705 0.29 -0.5
1,262,868 + QEN71_RS05705 0.29 -0.1
1,262,868 + QEN71_RS05705 0.29 +0.2
1,262,869 - QEN71_RS05705 0.29 +0.8
1,262,869 - QEN71_RS05705 0.29 -1.0
1,262,869 - QEN71_RS05705 0.29 -0.3
1,262,869 - QEN71_RS05705 0.29 +1.7
1,262,955 + QEN71_RS05705 0.38 -1.6
1,263,000 + QEN71_RS05705 0.43 -0.6
1,263,000 + QEN71_RS05705 0.43 -0.6
1,263,000 + QEN71_RS05705 0.43 -0.3
1,263,001 - QEN71_RS05705 0.43 +0.5
1,263,042 + QEN71_RS05705 0.48 -0.7
1,263,042 + QEN71_RS05705 0.48 -0.3
1,263,042 + QEN71_RS05705 0.48 +1.3
1,263,043 - QEN71_RS05705 0.48 -1.3
1,263,043 - QEN71_RS05705 0.48 -1.2
1,263,043 - QEN71_RS05705 0.48 +0.0
1,263,043 - QEN71_RS05705 0.48 -0.2
1,263,043 - QEN71_RS05705 0.48 -0.9
1,263,238 + QEN71_RS05705 0.69 -1.0
1,263,238 + QEN71_RS05705 0.69 +0.6
1,263,239 - QEN71_RS05705 0.70 +0.6
1,263,239 - QEN71_RS05705 0.70 -0.3
1,263,239 - QEN71_RS05705 0.70 -0.1
1,263,239 - QEN71_RS05705 0.70 +0.0
1,263,239 - QEN71_RS05705 0.70 -0.6
1,263,239 - QEN71_RS05705 0.70 +0.5
1,263,239 - QEN71_RS05705 0.70 +1.6
1,263,273 + QEN71_RS05705 0.73 -0.5
1,263,273 + QEN71_RS05705 0.73 +0.0
1,263,273 + QEN71_RS05705 0.73 +0.6
1,263,273 + QEN71_RS05705 0.73 +1.6
1,263,273 + QEN71_RS05705 0.73 +0.1
1,263,273 + QEN71_RS05705 0.73 +0.1
1,263,273 + QEN71_RS05705 0.73 -0.3
1,263,273 + QEN71_RS05705 0.73 -0.3
1,263,274 - QEN71_RS05705 0.73 -0.6
1,263,274 - QEN71_RS05705 0.73 +0.3
1,263,274 - QEN71_RS05705 0.73 -0.4
1,263,274 - QEN71_RS05705 0.73 +0.8
1,263,274 - QEN71_RS05705 0.73 -0.2
1,263,274 - QEN71_RS05705 0.73 -0.0
1,263,274 - QEN71_RS05705 0.73 +0.3
1,263,274 - QEN71_RS05705 0.73 +0.3
1,263,274 - QEN71_RS05705 0.73 +1.1
1,263,274 - QEN71_RS05705 0.73 +0.7
1,263,274 - QEN71_RS05705 0.73 -0.6
1,263,274 - QEN71_RS05705 0.73 -0.5
1,263,277 + QEN71_RS05705 0.74 +1.1
1,263,277 + QEN71_RS05705 0.74 -0.4
1,263,278 - QEN71_RS05705 0.74 +0.7
1,263,278 - QEN71_RS05705 0.74 +1.2
1,263,278 - QEN71_RS05705 0.74 +0.6
1,263,278 - QEN71_RS05705 0.74 +0.4
1,263,309 + QEN71_RS05705 0.77 -1.6
1,263,310 - QEN71_RS05705 0.77 +0.1
1,263,310 - QEN71_RS05705 0.77 +0.2
1,263,310 - QEN71_RS05705 0.77 -0.6
1,263,310 - QEN71_RS05705 0.77 -0.4
1,263,310 - QEN71_RS05705 0.77 +1.3
1,263,319 - QEN71_RS05705 0.78 -0.6
1,263,319 - QEN71_RS05705 0.78 -0.0
1,263,319 - QEN71_RS05705 0.78 +0.4
1,263,319 - QEN71_RS05705 0.78 -1.0
1,263,409 - QEN71_RS05705 0.88 +0.5
1,263,409 - QEN71_RS05705 0.88 +0.0
1,263,888 + QEN71_RS05710 0.22 +0.1
1,264,025 + QEN71_RS05710 0.32 -0.9
1,264,175 + QEN71_RS05710 0.43 +1.1
1,264,176 - QEN71_RS05710 0.43 +1.5
1,264,176 - QEN71_RS05710 0.43 +1.1
1,264,176 - QEN71_RS05710 0.43 -1.0
1,264,316 + QEN71_RS05710 0.54 -0.0
1,264,316 + QEN71_RS05710 0.54 -0.8
1,264,316 + QEN71_RS05710 0.54 +0.2
1,264,316 + QEN71_RS05710 0.54 +0.5
1,264,316 + QEN71_RS05710 0.54 -0.4
1,264,316 + QEN71_RS05710 0.54 +0.4
1,264,317 - QEN71_RS05710 0.54 -0.9
1,264,317 - QEN71_RS05710 0.54 -2.6
1,264,317 - QEN71_RS05710 0.54 -1.0
1,264,337 + QEN71_RS05710 0.56 -0.2
1,264,352 + QEN71_RS05710 0.57 -0.3
1,264,370 + QEN71_RS05710 0.58 -0.2
1,264,370 + QEN71_RS05710 0.58 -0.4
1,264,370 + QEN71_RS05710 0.58 +0.1
1,264,370 + QEN71_RS05710 0.58 -0.8
1,264,370 + QEN71_RS05710 0.58 +1.8
1,264,370 + QEN71_RS05710 0.58 -1.1
1,264,370 + QEN71_RS05710 0.58 +0.8
1,264,370 + QEN71_RS05710 0.58 -0.6
1,264,370 + QEN71_RS05710 0.58 -0.2
1,264,370 + QEN71_RS05710 0.58 +1.1
1,264,371 - QEN71_RS05710 0.58 +0.1
1,264,371 - QEN71_RS05710 0.58 +0.9
1,264,371 - QEN71_RS05710 0.58 +0.6
1,264,371 - QEN71_RS05710 0.58 +0.1
1,264,371 - QEN71_RS05710 0.58 -0.8
1,264,371 - QEN71_RS05710 0.58 -1.4
1,264,371 - QEN71_RS05710 0.58 -0.4
1,264,371 - QEN71_RS05710 0.58 +0.7
1,264,371 - QEN71_RS05710 0.58 +0.1
1,264,371 - QEN71_RS05710 0.58 -1.0
1,264,371 - QEN71_RS05710 0.58 +1.1
1,264,371 - QEN71_RS05710 0.58 +0.1
1,264,382 + QEN71_RS05710 0.59 -0.9
1,264,383 - QEN71_RS05710 0.59 +0.0
1,264,383 - QEN71_RS05710 0.59 -0.6
1,264,383 - QEN71_RS05710 0.59 -0.2
1,264,383 - QEN71_RS05710 0.59 -0.8
1,264,383 - QEN71_RS05710 0.59 -0.3
1,264,383 - QEN71_RS05710 0.59 -0.7
1,264,383 - QEN71_RS05710 0.59 -0.6
1,264,383 - QEN71_RS05710 0.59 -0.6
1,264,498 + QEN71_RS05710 0.68 -1.6
1,264,498 + QEN71_RS05710 0.68 -0.4
1,264,499 - QEN71_RS05710 0.68 -0.2
1,264,499 - QEN71_RS05710 0.68 -1.2
1,264,499 - QEN71_RS05710 0.68 +1.1

Or see this region's nucleotide sequence