Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04670

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04665 and QEN71_RS04670 are separated by 108 nucleotidesQEN71_RS04670 and QEN71_RS04675 are separated by 148 nucleotidesQEN71_RS04675 and QEN71_RS04680 are separated by 66 nucleotidesQEN71_RS04680 and QEN71_RS04685 are separated by 149 nucleotidesQEN71_RS04685 and QEN71_RS04690 are separated by 188 nucleotides QEN71_RS04665: QEN71_RS04665 - excinuclease ABC subunit UvrC, at 1,020,795 to 1,023,005 _RS04665 QEN71_RS04670: QEN71_RS04670 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,023,114 to 1,023,704 _RS04670 QEN71_RS04675: QEN71_RS04675 - tRNA-Gly, at 1,023,853 to 1,023,928 _RS04675 QEN71_RS04680: QEN71_RS04680 - tRNA-Gly, at 1,023,995 to 1,024,070 _RS04680 QEN71_RS04685: QEN71_RS04685 - tRNA-Cys, at 1,024,220 to 1,024,293 _RS04685 QEN71_RS04690: QEN71_RS04690 - GNAT family N-acetyltransferase, at 1,024,482 to 1,024,965 _RS04690 Position (kb) 1023 1024Strain fitness (log2 ratio) -2 -1 0 1at 1022.272 kb on + strand, within QEN71_RS04665at 1022.272 kb on + strand, within QEN71_RS04665at 1022.272 kb on + strand, within QEN71_RS04665at 1022.272 kb on + strand, within QEN71_RS04665at 1022.272 kb on + strand, within QEN71_RS04665at 1022.273 kb on - strand, within QEN71_RS04665at 1022.273 kb on - strand, within QEN71_RS04665at 1022.273 kb on - strand, within QEN71_RS04665at 1022.273 kb on - strand, within QEN71_RS04665at 1022.273 kb on - strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.294 kb on + strand, within QEN71_RS04665at 1022.295 kb on - strand, within QEN71_RS04665at 1022.295 kb on - strand, within QEN71_RS04665at 1022.295 kb on - strand, within QEN71_RS04665at 1022.370 kb on + strand, within QEN71_RS04665at 1022.370 kb on + strand, within QEN71_RS04665at 1022.370 kb on + strand, within QEN71_RS04665at 1022.370 kb on + strand, within QEN71_RS04665at 1022.371 kb on - strand, within QEN71_RS04665at 1022.371 kb on - strand, within QEN71_RS04665at 1022.371 kb on - strand, within QEN71_RS04665at 1022.403 kb on + strand, within QEN71_RS04665at 1022.403 kb on + strand, within QEN71_RS04665at 1022.404 kb on - strand, within QEN71_RS04665at 1022.648 kb on + strand, within QEN71_RS04665at 1022.648 kb on + strand, within QEN71_RS04665at 1022.648 kb on + strand, within QEN71_RS04665at 1022.649 kb on - strand, within QEN71_RS04665at 1022.649 kb on - strand, within QEN71_RS04665at 1022.649 kb on - strand, within QEN71_RS04665at 1022.649 kb on - strand, within QEN71_RS04665at 1022.649 kb on - strand, within QEN71_RS04665at 1022.934 kb on - strandat 1022.988 kb on + strandat 1022.988 kb on + strandat 1022.988 kb on + strandat 1022.988 kb on + strandat 1022.989 kb on - strandat 1022.989 kb on - strandat 1022.989 kb on - strandat 1022.989 kb on - strandat 1022.989 kb on - strandat 1023.015 kb on + strandat 1023.016 kb on - strandat 1023.016 kb on - strandat 1023.016 kb on - strandat 1023.089 kb on + strandat 1023.089 kb on + strandat 1023.089 kb on + strandat 1023.101 kb on + strandat 1023.702 kb on + strandat 1023.702 kb on + strandat 1023.702 kb on + strandat 1023.702 kb on + strandat 1023.703 kb on - strandat 1023.703 kb on - strandat 1023.750 kb on + strandat 1023.829 kb on + strandat 1023.829 kb on + strandat 1023.973 kb on + strandat 1023.979 kb on + strandat 1023.979 kb on + strandat 1023.979 kb on + strandat 1023.979 kb on + strandat 1023.979 kb on + strandat 1023.979 kb on + strandat 1024.198 kb on + strandat 1024.427 kb on + strandat 1024.428 kb on - strandat 1024.481 kb on + strandat 1024.481 kb on + strandat 1024.481 kb on + strandat 1024.481 kb on + strandat 1024.481 kb on + strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.482 kb on - strandat 1024.554 kb on + strand, within QEN71_RS04690at 1024.554 kb on + strand, within QEN71_RS04690at 1024.554 kb on + strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.555 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.560 kb on - strand, within QEN71_RS04690at 1024.608 kb on + strand, within QEN71_RS04690at 1024.608 kb on + strand, within QEN71_RS04690at 1024.608 kb on + strand, within QEN71_RS04690at 1024.608 kb on + strand, within QEN71_RS04690at 1024.608 kb on + strand, within QEN71_RS04690at 1024.609 kb on - strand, within QEN71_RS04690at 1024.677 kb on - strand, within QEN71_RS04690at 1024.699 kb on - strand, within QEN71_RS04690at 1024.699 kb on - strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.702 kb on + strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690at 1024.703 kb on - strand, within QEN71_RS04690

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,022,272 + QEN71_RS04665 0.67 -1.2
1,022,272 + QEN71_RS04665 0.67 -0.3
1,022,272 + QEN71_RS04665 0.67 -0.4
1,022,272 + QEN71_RS04665 0.67 -0.5
1,022,272 + QEN71_RS04665 0.67 -1.1
1,022,273 - QEN71_RS04665 0.67 -0.7
1,022,273 - QEN71_RS04665 0.67 +0.1
1,022,273 - QEN71_RS04665 0.67 +0.1
1,022,273 - QEN71_RS04665 0.67 -0.6
1,022,273 - QEN71_RS04665 0.67 +0.3
1,022,294 + QEN71_RS04665 0.68 -0.1
1,022,294 + QEN71_RS04665 0.68 -0.2
1,022,294 + QEN71_RS04665 0.68 -1.5
1,022,294 + QEN71_RS04665 0.68 +0.1
1,022,294 + QEN71_RS04665 0.68 +1.0
1,022,294 + QEN71_RS04665 0.68 -1.1
1,022,295 - QEN71_RS04665 0.68 -1.0
1,022,295 - QEN71_RS04665 0.68 +0.4
1,022,295 - QEN71_RS04665 0.68 -0.6
1,022,370 + QEN71_RS04665 0.71 -1.3
1,022,370 + QEN71_RS04665 0.71 -0.9
1,022,370 + QEN71_RS04665 0.71 -0.7
1,022,370 + QEN71_RS04665 0.71 -0.2
1,022,371 - QEN71_RS04665 0.71 -1.1
1,022,371 - QEN71_RS04665 0.71 +0.3
1,022,371 - QEN71_RS04665 0.71 +1.1
1,022,403 + QEN71_RS04665 0.73 -1.0
1,022,403 + QEN71_RS04665 0.73 -1.4
1,022,404 - QEN71_RS04665 0.73 -0.2
1,022,648 + QEN71_RS04665 0.84 +0.7
1,022,648 + QEN71_RS04665 0.84 +0.5
1,022,648 + QEN71_RS04665 0.84 +0.3
1,022,649 - QEN71_RS04665 0.84 +0.1
1,022,649 - QEN71_RS04665 0.84 -1.1
1,022,649 - QEN71_RS04665 0.84 -1.2
1,022,649 - QEN71_RS04665 0.84 -0.1
1,022,649 - QEN71_RS04665 0.84 -0.4
1,022,934 - -0.6
1,022,988 + +0.5
1,022,988 + +1.3
1,022,988 + +1.1
1,022,988 + +0.3
1,022,989 - -0.4
1,022,989 - +0.1
1,022,989 - +1.0
1,022,989 - -0.1
1,022,989 - +0.2
1,023,015 + -0.4
1,023,016 - +1.1
1,023,016 - -1.4
1,023,016 - -0.8
1,023,089 + -0.2
1,023,089 + -0.3
1,023,089 + +1.2
1,023,101 + +0.1
1,023,702 + -0.3
1,023,702 + +0.1
1,023,702 + -0.2
1,023,702 + +0.5
1,023,703 - +0.1
1,023,703 - -0.7
1,023,750 + +0.9
1,023,829 + +0.9
1,023,829 + +1.5
1,023,973 + -0.2
1,023,979 + +0.3
1,023,979 + -0.8
1,023,979 + -0.3
1,023,979 + +0.3
1,023,979 + +1.2
1,023,979 + +1.1
1,024,198 + +0.1
1,024,427 + -1.2
1,024,428 - -0.6
1,024,481 + +0.2
1,024,481 + -1.9
1,024,481 + +0.5
1,024,481 + +0.2
1,024,481 + +1.1
1,024,482 - -1.4
1,024,482 - -0.0
1,024,482 - -0.0
1,024,482 - -0.5
1,024,482 - +0.9
1,024,482 - +0.2
1,024,482 - +0.2
1,024,554 + QEN71_RS04690 0.15 +0.1
1,024,554 + QEN71_RS04690 0.15 +0.1
1,024,554 + QEN71_RS04690 0.15 -0.3
1,024,555 - QEN71_RS04690 0.15 -1.0
1,024,555 - QEN71_RS04690 0.15 +0.6
1,024,555 - QEN71_RS04690 0.15 +1.0
1,024,555 - QEN71_RS04690 0.15 -0.5
1,024,555 - QEN71_RS04690 0.15 +0.8
1,024,555 - QEN71_RS04690 0.15 +0.8
1,024,560 - QEN71_RS04690 0.16 +0.5
1,024,560 - QEN71_RS04690 0.16 -1.2
1,024,560 - QEN71_RS04690 0.16 +0.8
1,024,560 - QEN71_RS04690 0.16 +1.5
1,024,560 - QEN71_RS04690 0.16 +0.8
1,024,560 - QEN71_RS04690 0.16 -1.5
1,024,560 - QEN71_RS04690 0.16 -0.7
1,024,560 - QEN71_RS04690 0.16 -0.3
1,024,608 + QEN71_RS04690 0.26 +0.3
1,024,608 + QEN71_RS04690 0.26 +0.6
1,024,608 + QEN71_RS04690 0.26 -0.5
1,024,608 + QEN71_RS04690 0.26 -0.7
1,024,608 + QEN71_RS04690 0.26 +0.5
1,024,609 - QEN71_RS04690 0.26 -0.2
1,024,677 - QEN71_RS04690 0.40 -0.3
1,024,699 - QEN71_RS04690 0.45 -0.4
1,024,699 - QEN71_RS04690 0.45 -0.0
1,024,702 + QEN71_RS04690 0.45 -0.6
1,024,702 + QEN71_RS04690 0.45 -0.6
1,024,702 + QEN71_RS04690 0.45 -0.6
1,024,702 + QEN71_RS04690 0.45 +0.7
1,024,702 + QEN71_RS04690 0.45 +0.5
1,024,702 + QEN71_RS04690 0.45 +1.4
1,024,702 + QEN71_RS04690 0.45 +0.5
1,024,702 + QEN71_RS04690 0.45 -1.1
1,024,702 + QEN71_RS04690 0.45 +1.1
1,024,702 + QEN71_RS04690 0.45 -0.4
1,024,702 + QEN71_RS04690 0.45 +0.7
1,024,702 + QEN71_RS04690 0.45 -0.1
1,024,702 + QEN71_RS04690 0.45 -0.8
1,024,702 + QEN71_RS04690 0.45 -0.2
1,024,702 + QEN71_RS04690 0.45 -1.9
1,024,702 + QEN71_RS04690 0.45 -0.7
1,024,702 + QEN71_RS04690 0.45 -0.5
1,024,703 - QEN71_RS04690 0.46 -0.5
1,024,703 - QEN71_RS04690 0.46 -1.4
1,024,703 - QEN71_RS04690 0.46 +0.4
1,024,703 - QEN71_RS04690 0.46 -0.7
1,024,703 - QEN71_RS04690 0.46 -1.0
1,024,703 - QEN71_RS04690 0.46 +0.0
1,024,703 - QEN71_RS04690 0.46 -0.5
1,024,703 - QEN71_RS04690 0.46 -2.1
1,024,703 - QEN71_RS04690 0.46 -1.2
1,024,703 - QEN71_RS04690 0.46 +0.3
1,024,703 - QEN71_RS04690 0.46 -0.0
1,024,703 - QEN71_RS04690 0.46 -0.5
1,024,703 - QEN71_RS04690 0.46 -0.0
1,024,703 - QEN71_RS04690 0.46 +0.5
1,024,703 - QEN71_RS04690 0.46 +0.5
1,024,703 - QEN71_RS04690 0.46 -1.7
1,024,703 - QEN71_RS04690 0.46 -0.8
1,024,703 - QEN71_RS04690 0.46 -0.5

Or see this region's nucleotide sequence