Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01330

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01325 and QEN71_RS01330 are separated by 239 nucleotidesQEN71_RS01330 and QEN71_RS01335 are separated by 22 nucleotides QEN71_RS01325: QEN71_RS01325 - lipoyl synthase, at 296,711 to 297,712 _RS01325 QEN71_RS01330: QEN71_RS01330 - Na/Pi cotransporter family protein, at 297,952 to 299,634 _RS01330 QEN71_RS01335: QEN71_RS01335 - DeoR/GlpR family DNA-binding transcription regulator, at 299,657 to 300,430 _RS01335 Position (kb) 297 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 297.726 kb on + strandat 297.793 kb on + strandat 297.794 kb on - strandat 297.794 kb on - strandat 297.839 kb on + strandat 297.840 kb on - strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.865 kb on + strandat 297.951 kb on + strandat 297.951 kb on + strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 297.952 kb on - strandat 298.008 kb on + strandat 298.008 kb on + strandat 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.177 kb on - strand, within QEN71_RS01330at 298.508 kb on - strand, within QEN71_RS01330at 298.748 kb on + strand, within QEN71_RS01330at 298.749 kb on - strand, within QEN71_RS01330at 298.749 kb on - strand, within QEN71_RS01330at 298.795 kb on + strand, within QEN71_RS01330at 298.795 kb on + strand, within QEN71_RS01330at 298.795 kb on + strand, within QEN71_RS01330at 298.795 kb on + strand, within QEN71_RS01330at 298.795 kb on + strand, within QEN71_RS01330at 298.796 kb on - strand, within QEN71_RS01330at 299.086 kb on + strand, within QEN71_RS01330at 299.086 kb on + strand, within QEN71_RS01330at 299.086 kb on + strand, within QEN71_RS01330at 299.087 kb on - strand, within QEN71_RS01330at 299.087 kb on - strand, within QEN71_RS01330at 299.087 kb on - strand, within QEN71_RS01330at 299.104 kb on + strand, within QEN71_RS01330at 299.104 kb on + strand, within QEN71_RS01330at 299.105 kb on - strand, within QEN71_RS01330at 299.298 kb on + strand, within QEN71_RS01330at 299.298 kb on + strand, within QEN71_RS01330at 299.298 kb on + strand, within QEN71_RS01330at 299.298 kb on + strand, within QEN71_RS01330at 299.298 kb on + strand, within QEN71_RS01330at 299.299 kb on - strand, within QEN71_RS01330at 299.299 kb on - strand, within QEN71_RS01330at 299.299 kb on - strand, within QEN71_RS01330at 299.336 kb on + strand, within QEN71_RS01330at 299.414 kb on - strand, within QEN71_RS01330at 299.419 kb on + strand, within QEN71_RS01330at 299.419 kb on + strand, within QEN71_RS01330at 299.419 kb on + strand, within QEN71_RS01330at 299.419 kb on + strand, within QEN71_RS01330at 299.543 kb on + strandat 299.572 kb on - strandat 299.572 kb on - strandat 299.572 kb on - strandat 299.666 kb on + strandat 299.666 kb on + strandat 299.666 kb on + strandat 299.667 kb on - strandat 299.667 kb on - strandat 299.667 kb on - strandat 299.667 kb on - strandat 299.699 kb on - strandat 299.699 kb on - strandat 299.732 kb on + strandat 299.733 kb on - strandat 299.763 kb on + strand, within QEN71_RS01335at 299.764 kb on - strand, within QEN71_RS01335at 299.796 kb on + strand, within QEN71_RS01335at 299.796 kb on + strand, within QEN71_RS01335at 299.797 kb on - strand, within QEN71_RS01335at 299.807 kb on + strand, within QEN71_RS01335at 299.807 kb on + strand, within QEN71_RS01335at 299.808 kb on - strand, within QEN71_RS01335at 299.808 kb on - strand, within QEN71_RS01335at 299.868 kb on + strand, within QEN71_RS01335at 299.868 kb on + strand, within QEN71_RS01335at 299.869 kb on - strand, within QEN71_RS01335at 299.869 kb on - strand, within QEN71_RS01335at 299.869 kb on - strand, within QEN71_RS01335at 300.008 kb on + strand, within QEN71_RS01335at 300.008 kb on + strand, within QEN71_RS01335at 300.008 kb on + strand, within QEN71_RS01335at 300.009 kb on - strand, within QEN71_RS01335at 300.009 kb on - strand, within QEN71_RS01335at 300.339 kb on - strand, within QEN71_RS01335at 300.401 kb on + strandat 300.402 kb on - strandat 300.434 kb on + strandat 300.434 kb on + strandat 300.435 kb on - strandat 300.435 kb on - strandat 300.435 kb on - strandat 300.455 kb on - strandat 300.455 kb on - strandat 300.455 kb on - strandat 300.455 kb on - strandat 300.478 kb on + strandat 300.490 kb on + strandat 300.491 kb on - strandat 300.491 kb on - strandat 300.491 kb on - strandat 300.499 kb on - strandat 300.517 kb on + strandat 300.517 kb on + strandat 300.518 kb on - strandat 300.539 kb on + strandat 300.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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297,726 + -0.2
297,793 + +1.0
297,794 - -0.8
297,794 - -1.0
297,839 + -0.2
297,840 - -1.1
297,865 + -0.2
297,865 + -0.3
297,865 + +0.1
297,865 + -1.3
297,951 + +0.1
297,951 + -0.6
297,952 - -0.6
297,952 - -0.5
297,952 - -0.3
297,952 - -0.5
297,952 - +0.3
297,952 - +0.9
298,008 + +0.0
298,008 + -0.3
298,177 - QEN71_RS01330 0.13 -0.8
298,177 - QEN71_RS01330 0.13 +1.2
298,177 - QEN71_RS01330 0.13 -1.1
298,177 - QEN71_RS01330 0.13 +0.9
298,177 - QEN71_RS01330 0.13 +0.1
298,177 - QEN71_RS01330 0.13 +1.4
298,177 - QEN71_RS01330 0.13 -0.6
298,508 - QEN71_RS01330 0.33 -0.5
298,748 + QEN71_RS01330 0.47 -1.0
298,749 - QEN71_RS01330 0.47 -1.1
298,749 - QEN71_RS01330 0.47 -0.1
298,795 + QEN71_RS01330 0.50 -0.3
298,795 + QEN71_RS01330 0.50 -0.5
298,795 + QEN71_RS01330 0.50 -1.4
298,795 + QEN71_RS01330 0.50 +1.0
298,795 + QEN71_RS01330 0.50 -0.3
298,796 - QEN71_RS01330 0.50 +0.7
299,086 + QEN71_RS01330 0.67 -0.9
299,086 + QEN71_RS01330 0.67 +0.4
299,086 + QEN71_RS01330 0.67 +0.0
299,087 - QEN71_RS01330 0.67 -1.3
299,087 - QEN71_RS01330 0.67 +0.1
299,087 - QEN71_RS01330 0.67 +0.7
299,104 + QEN71_RS01330 0.68 +0.3
299,104 + QEN71_RS01330 0.68 -0.1
299,105 - QEN71_RS01330 0.69 +1.0
299,298 + QEN71_RS01330 0.80 -0.2
299,298 + QEN71_RS01330 0.80 +0.1
299,298 + QEN71_RS01330 0.80 +0.2
299,298 + QEN71_RS01330 0.80 -0.9
299,298 + QEN71_RS01330 0.80 -0.5
299,299 - QEN71_RS01330 0.80 +0.0
299,299 - QEN71_RS01330 0.80 +2.5
299,299 - QEN71_RS01330 0.80 +0.4
299,336 + QEN71_RS01330 0.82 +0.1
299,414 - QEN71_RS01330 0.87 -0.7
299,419 + QEN71_RS01330 0.87 -0.2
299,419 + QEN71_RS01330 0.87 -0.9
299,419 + QEN71_RS01330 0.87 -1.5
299,419 + QEN71_RS01330 0.87 -2.1
299,543 + +0.9
299,572 - -0.3
299,572 - -0.5
299,572 - +1.0
299,666 + -0.3
299,666 + +1.2
299,666 + +0.3
299,667 - -0.4
299,667 - -2.2
299,667 - -0.6
299,667 - -2.6
299,699 - -0.5
299,699 - +1.2
299,732 + -0.1
299,733 - -0.6
299,763 + QEN71_RS01335 0.14 +0.7
299,764 - QEN71_RS01335 0.14 +2.3
299,796 + QEN71_RS01335 0.18 +0.1
299,796 + QEN71_RS01335 0.18 +0.3
299,797 - QEN71_RS01335 0.18 +1.5
299,807 + QEN71_RS01335 0.19 -0.8
299,807 + QEN71_RS01335 0.19 +0.2
299,808 - QEN71_RS01335 0.20 -1.9
299,808 - QEN71_RS01335 0.20 -1.1
299,868 + QEN71_RS01335 0.27 -0.7
299,868 + QEN71_RS01335 0.27 -0.3
299,869 - QEN71_RS01335 0.27 +0.0
299,869 - QEN71_RS01335 0.27 +0.1
299,869 - QEN71_RS01335 0.27 -3.0
300,008 + QEN71_RS01335 0.45 +0.4
300,008 + QEN71_RS01335 0.45 +1.2
300,008 + QEN71_RS01335 0.45 +0.8
300,009 - QEN71_RS01335 0.45 -2.1
300,009 - QEN71_RS01335 0.45 -0.4
300,339 - QEN71_RS01335 0.88 -0.3
300,401 + +0.7
300,402 - -1.1
300,434 + -0.1
300,434 + -0.8
300,435 - -1.8
300,435 - +0.1
300,435 - +0.2
300,455 - +0.6
300,455 - +0.4
300,455 - +1.1
300,455 - -0.4
300,478 + -0.7
300,490 + -0.3
300,491 - +0.7
300,491 - -0.1
300,491 - +0.3
300,499 - +0.4
300,517 + +0.0
300,517 + +0.2
300,518 - -0.9
300,539 + -0.2
300,540 - +2.4

Or see this region's nucleotide sequence