Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04193 and MIT1002_04194 are separated by 201 nucleotides MIT1002_04194 and MIT1002_04195 are separated by 115 nucleotides MIT1002_04195 and MIT1002_04196 are separated by 465 nucleotides
MIT1002_04193: MIT1002_04193 - Transposase IS116/IS110/IS902 family protein, at 53,014 to 54,063
_04193
MIT1002_04194: MIT1002_04194 - hypothetical protein, at 54,265 to 54,693
_04194
MIT1002_04195: MIT1002_04195 - hypothetical protein, at 54,809 to 55,162
_04195
MIT1002_04196: MIT1002_04196 - Transposase IS116/IS110/IS902 family protein, at 55,628 to 56,674
_04196
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.146 kb on + strand at 54.173 kb on - strand at 54.184 kb on - strand at 54.241 kb on + strand at 54.250 kb on - strand at 54.251 kb on + strand at 54.251 kb on + strand at 54.262 kb on + strand at 54.266 kb on - strand at 54.471 kb on + strand, within MIT1002_04194 at 54.472 kb on - strand, within MIT1002_04194 at 54.476 kb on + strand, within MIT1002_04194 at 54.479 kb on + strand, within MIT1002_04194 at 54.505 kb on - strand, within MIT1002_04194 at 54.605 kb on + strand, within MIT1002_04194 at 54.613 kb on - strand, within MIT1002_04194 at 54.742 kb on - strand at 54.770 kb on - strand at 54.850 kb on + strand, within MIT1002_04195 at 54.858 kb on - strand, within MIT1002_04195 at 54.950 kb on - strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.040 kb on + strand, within MIT1002_04195 at 55.058 kb on - strand, within MIT1002_04195 at 55.089 kb on + strand, within MIT1002_04195 at 55.146 kb on - strand at 55.151 kb on - strand at 55.165 kb on - strand at 55.170 kb on - strand at 55.172 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.258 kb on - strand at 55.276 kb on + strand at 55.284 kb on - strand at 55.294 kb on + strand at 55.356 kb on + strand at 55.364 kb on - strand at 55.409 kb on - strand at 55.416 kb on - strand at 55.432 kb on + strand at 55.440 kb on - strand at 55.440 kb on - strand at 55.448 kb on + strand at 55.483 kb on - strand at 55.491 kb on + strand at 55.527 kb on + strand at 55.529 kb on + strand at 55.533 kb on - strand at 55.582 kb on - strand at 55.612 kb on + strand at 55.625 kb on + strand at 55.625 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.658 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.758 kb on + strand, within MIT1002_04196 at 55.776 kb on + strand, within MIT1002_04196 at 55.811 kb on - strand, within MIT1002_04196 at 55.818 kb on + strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.850 kb on - strand, within MIT1002_04196 at 55.857 kb on + strand, within MIT1002_04196 at 55.865 kb on - strand, within MIT1002_04196 at 55.865 kb on - strand, within MIT1002_04196 at 55.916 kb on + strand, within MIT1002_04196 at 55.916 kb on + strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.926 kb on + strand, within MIT1002_04196 at 55.929 kb on - strand, within MIT1002_04196 at 55.934 kb on + strand, within MIT1002_04196 at 55.934 kb on - strand, within MIT1002_04196 at 55.942 kb on - strand, within MIT1002_04196 at 55.944 kb on + strand, within MIT1002_04196 at 55.944 kb on - strand, within MIT1002_04196 at 55.970 kb on + strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 56.103 kb on - strand, within MIT1002_04196 at 56.118 kb on + strand, within MIT1002_04196 at 56.126 kb on - strand, within MIT1002_04196
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 54,146 + -1.3 54,173 - -0.7 54,184 - +0.3 54,241 + -0.0 54,250 - -2.2 54,251 + -0.1 54,251 + -0.5 54,262 + +0.8 54,266 - +2.2 54,471 + MIT1002_04194 0.48 +0.4 54,472 - MIT1002_04194 0.48 -0.9 54,476 + MIT1002_04194 0.49 +0.2 54,479 + MIT1002_04194 0.50 +0.7 54,505 - MIT1002_04194 0.56 -0.1 54,605 + MIT1002_04194 0.79 -0.7 54,613 - MIT1002_04194 0.81 -1.4 54,742 - -0.5 54,770 - +2.2 54,850 + MIT1002_04195 0.12 +0.0 54,858 - MIT1002_04195 0.14 -0.5 54,950 - MIT1002_04195 0.40 -2.3 55,034 + MIT1002_04195 0.64 -0.3 55,034 + MIT1002_04195 0.64 +0.2 55,034 + MIT1002_04195 0.64 +1.6 55,034 + MIT1002_04195 0.64 -0.0 55,040 + MIT1002_04195 0.65 -0.7 55,058 - MIT1002_04195 0.70 +0.4 55,089 + MIT1002_04195 0.79 +0.2 55,146 - -0.1 55,151 - +0.5 55,165 - +0.8 55,170 - +0.2 55,172 + -1.2 55,224 + +0.7 55,224 + +0.4 55,224 + +0.8 55,224 + -0.3 55,232 - +0.3 55,232 - -1.4 55,232 - +0.4 55,258 - +0.4 55,276 + -2.8 55,284 - -0.4 55,294 + +0.3 55,356 + +0.1 55,364 - -0.6 55,409 - -0.3 55,416 - -0.2 55,432 + +1.5 55,440 - -0.8 55,440 - -1.9 55,448 + +0.6 55,483 - -0.2 55,491 + -0.5 55,527 + +1.6 55,529 + -0.8 55,533 - -0.8 55,582 - -0.3 55,612 + -0.3 55,625 + +0.8 55,625 + -0.1 55,652 + -0.3 55,652 + +0.6 55,652 + -0.3 55,652 + -1.1 55,652 + +1.4 55,658 - -0.1 55,660 - -1.4 55,660 - +0.0 55,660 - +1.1 55,660 - +1.4 55,660 - -0.2 55,660 - +0.0 55,660 - -0.6 55,660 - +0.1 55,660 - +0.3 55,660 - +1.2 55,758 + MIT1002_04196 0.12 +0.0 55,776 + MIT1002_04196 0.14 +0.3 55,811 - MIT1002_04196 0.17 +0.2 55,818 + MIT1002_04196 0.18 -1.1 55,826 - MIT1002_04196 0.19 +0.9 55,826 - MIT1002_04196 0.19 +0.0 55,826 - MIT1002_04196 0.19 +0.2 55,850 - MIT1002_04196 0.21 -0.3 55,857 + MIT1002_04196 0.22 +0.9 55,865 - MIT1002_04196 0.23 +1.7 55,865 - MIT1002_04196 0.23 -1.1 55,916 + MIT1002_04196 0.28 +1.1 55,916 + MIT1002_04196 0.28 -0.7 55,924 - MIT1002_04196 0.28 +0.1 55,924 - MIT1002_04196 0.28 +1.3 55,924 - MIT1002_04196 0.28 +1.2 55,926 + MIT1002_04196 0.28 +0.3 55,929 - MIT1002_04196 0.29 +0.0 55,934 + MIT1002_04196 0.29 -0.9 55,934 - MIT1002_04196 0.29 -0.1 55,942 - MIT1002_04196 0.30 +0.4 55,944 + MIT1002_04196 0.30 +0.6 55,944 - MIT1002_04196 0.30 +1.2 55,970 + MIT1002_04196 0.33 +0.4 55,978 - MIT1002_04196 0.33 +0.3 55,978 - MIT1002_04196 0.33 +0.3 55,978 - MIT1002_04196 0.33 -0.0 56,103 - MIT1002_04196 0.45 +0.9 56,118 + MIT1002_04196 0.47 +0.1 56,126 - MIT1002_04196 0.48 -0.0
Or see this region's nucleotide sequence