Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04152 and MIT1002_04153 overlap by 4 nucleotides MIT1002_04153 and MIT1002_04154 overlap by 10 nucleotides MIT1002_04154 and MIT1002_04155 are separated by 109 nucleotides
MIT1002_04152: MIT1002_04152 - Cytochrome c oxidase subunit 1, at 16,766 to 19,273
_04152
MIT1002_04153: MIT1002_04153 - hypothetical protein, at 19,270 to 19,611
_04153
MIT1002_04154: MIT1002_04154 - cytochrome c oxidase assembly factor CtaG, at 19,602 to 20,405
_04154
MIT1002_04155: MIT1002_04155 - Rhodocoxin reductase, at 20,515 to 22,194
_04155
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.604 kb on - strand, within MIT1002_04152 at 18.681 kb on + strand, within MIT1002_04152 at 18.713 kb on - strand, within MIT1002_04152 at 18.725 kb on + strand, within MIT1002_04152 at 18.725 kb on + strand, within MIT1002_04152 at 18.725 kb on + strand, within MIT1002_04152 at 18.725 kb on + strand, within MIT1002_04152 at 18.726 kb on + strand, within MIT1002_04152 at 18.727 kb on + strand, within MIT1002_04152 at 18.728 kb on - strand, within MIT1002_04152 at 18.733 kb on - strand, within MIT1002_04152 at 18.747 kb on - strand, within MIT1002_04152 at 18.772 kb on - strand, within MIT1002_04152 at 18.863 kb on + strand, within MIT1002_04152 at 18.865 kb on + strand, within MIT1002_04152 at 18.878 kb on + strand, within MIT1002_04152 at 18.878 kb on + strand, within MIT1002_04152 at 18.885 kb on + strand, within MIT1002_04152 at 18.966 kb on - strand, within MIT1002_04152 at 18.976 kb on - strand, within MIT1002_04152 at 19.108 kb on + strand at 19.120 kb on + strand at 19.120 kb on + strand at 19.120 kb on + strand at 19.120 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.155 kb on + strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.163 kb on - strand at 19.186 kb on - strand at 19.262 kb on - strand at 19.290 kb on + strand at 19.374 kb on + strand, within MIT1002_04153 at 19.382 kb on - strand, within MIT1002_04153 at 19.626 kb on + strand at 19.656 kb on - strand at 19.665 kb on + strand at 19.675 kb on + strand at 19.727 kb on + strand, within MIT1002_04154 at 19.768 kb on + strand, within MIT1002_04154 at 19.848 kb on + strand, within MIT1002_04154 at 19.851 kb on + strand, within MIT1002_04154 at 19.853 kb on + strand, within MIT1002_04154 at 19.854 kb on - strand, within MIT1002_04154 at 19.859 kb on - strand, within MIT1002_04154 at 19.874 kb on - strand, within MIT1002_04154 at 19.903 kb on - strand, within MIT1002_04154 at 19.903 kb on - strand, within MIT1002_04154 at 19.922 kb on + strand, within MIT1002_04154 at 19.940 kb on + strand, within MIT1002_04154 at 19.948 kb on - strand, within MIT1002_04154 at 20.034 kb on + strand, within MIT1002_04154 at 20.042 kb on - strand, within MIT1002_04154 at 20.052 kb on - strand, within MIT1002_04154 at 20.100 kb on - strand, within MIT1002_04154 at 20.130 kb on + strand, within MIT1002_04154 at 20.160 kb on - strand, within MIT1002_04154 at 20.214 kb on - strand, within MIT1002_04154 at 20.243 kb on - strand, within MIT1002_04154 at 20.301 kb on + strand, within MIT1002_04154 at 20.312 kb on - strand, within MIT1002_04154 at 20.328 kb on - strand at 20.331 kb on + strand at 20.333 kb on - strand at 20.368 kb on + strand at 20.368 kb on + strand at 20.368 kb on + strand at 20.368 kb on + strand at 20.376 kb on - strand at 20.376 kb on - strand at 20.379 kb on - strand at 20.429 kb on + strand at 20.435 kb on - strand at 20.507 kb on - strand at 20.520 kb on - strand at 20.530 kb on - strand at 20.548 kb on - strand at 20.553 kb on + strand at 20.603 kb on + strand at 20.611 kb on - strand at 20.653 kb on + strand at 20.742 kb on - strand, within MIT1002_04155 at 20.742 kb on - strand, within MIT1002_04155 at 20.781 kb on + strand, within MIT1002_04155 at 20.786 kb on + strand, within MIT1002_04155 at 20.786 kb on + strand, within MIT1002_04155 at 20.791 kb on + strand, within MIT1002_04155 at 20.791 kb on + strand, within MIT1002_04155 at 20.794 kb on - strand, within MIT1002_04155 at 20.833 kb on - strand, within MIT1002_04155 at 20.841 kb on - strand, within MIT1002_04155 at 20.846 kb on - strand, within MIT1002_04155 at 21.098 kb on - strand, within MIT1002_04155 at 21.100 kb on + strand, within MIT1002_04155 at 21.197 kb on - strand, within MIT1002_04155 at 21.205 kb on - strand, within MIT1002_04155 at 21.231 kb on + strand, within MIT1002_04155 at 21.257 kb on - strand, within MIT1002_04155 at 21.360 kb on + strand, within MIT1002_04155 at 21.360 kb on + strand, within MIT1002_04155 at 21.391 kb on + strand, within MIT1002_04155
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 18,604 - MIT1002_04152 0.73 +0.2 18,681 + MIT1002_04152 0.76 -1.4 18,713 - MIT1002_04152 0.78 -2.5 18,725 + MIT1002_04152 0.78 +1.6 18,725 + MIT1002_04152 0.78 -1.4 18,725 + MIT1002_04152 0.78 -3.0 18,725 + MIT1002_04152 0.78 -0.2 18,726 + MIT1002_04152 0.78 -0.9 18,727 + MIT1002_04152 0.78 -0.8 18,728 - MIT1002_04152 0.78 -2.1 18,733 - MIT1002_04152 0.78 -0.4 18,747 - MIT1002_04152 0.79 +2.7 18,772 - MIT1002_04152 0.80 -0.0 18,863 + MIT1002_04152 0.84 -0.6 18,865 + MIT1002_04152 0.84 +0.0 18,878 + MIT1002_04152 0.84 +0.4 18,878 + MIT1002_04152 0.84 -1.2 18,885 + MIT1002_04152 0.84 -0.5 18,966 - MIT1002_04152 0.88 +0.1 18,976 - MIT1002_04152 0.88 +0.2 19,108 + +0.2 19,120 + +0.6 19,120 + +1.0 19,120 + +0.7 19,120 + -0.2 19,155 + -0.2 19,155 + +0.2 19,155 + -2.5 19,155 + +1.4 19,155 + -0.6 19,155 + +0.1 19,155 + -0.2 19,155 + +0.5 19,163 - -0.1 19,163 - -0.2 19,163 - -0.4 19,163 - +2.1 19,163 - -0.4 19,163 - -0.2 19,163 - +0.4 19,163 - +1.2 19,163 - +0.2 19,163 - +0.8 19,163 - -0.6 19,186 - +2.0 19,262 - -0.8 19,290 + -0.2 19,374 + MIT1002_04153 0.30 -0.1 19,382 - MIT1002_04153 0.33 -0.3 19,626 + +1.3 19,656 - -1.5 19,665 + -0.2 19,675 + -0.3 19,727 + MIT1002_04154 0.16 -0.3 19,768 + MIT1002_04154 0.21 +0.8 19,848 + MIT1002_04154 0.31 +0.7 19,851 + MIT1002_04154 0.31 -0.5 19,853 + MIT1002_04154 0.31 +2.5 19,854 - MIT1002_04154 0.31 -0.4 19,859 - MIT1002_04154 0.32 +0.0 19,874 - MIT1002_04154 0.34 +1.4 19,903 - MIT1002_04154 0.37 +0.6 19,903 - MIT1002_04154 0.37 -1.1 19,922 + MIT1002_04154 0.40 -0.0 19,940 + MIT1002_04154 0.42 -0.0 19,948 - MIT1002_04154 0.43 +0.2 20,034 + MIT1002_04154 0.54 +0.2 20,042 - MIT1002_04154 0.55 -1.5 20,052 - MIT1002_04154 0.56 +0.8 20,100 - MIT1002_04154 0.62 -0.7 20,130 + MIT1002_04154 0.66 +0.5 20,160 - MIT1002_04154 0.69 +1.7 20,214 - MIT1002_04154 0.76 +0.3 20,243 - MIT1002_04154 0.80 +0.2 20,301 + MIT1002_04154 0.87 -0.1 20,312 - MIT1002_04154 0.88 +0.9 20,328 - -0.4 20,331 + -1.7 20,333 - +0.8 20,368 + -2.3 20,368 + -0.7 20,368 + -0.4 20,368 + +0.1 20,376 - -0.6 20,376 - +0.9 20,379 - +0.3 20,429 + +0.2 20,435 - -0.3 20,507 - +0.2 20,520 - +0.1 20,530 - +1.4 20,548 - -0.3 20,553 + +0.1 20,603 + +1.3 20,611 - +1.4 20,653 + -0.3 20,742 - MIT1002_04155 0.14 -0.1 20,742 - MIT1002_04155 0.14 -1.9 20,781 + MIT1002_04155 0.16 +0.4 20,786 + MIT1002_04155 0.16 -0.2 20,786 + MIT1002_04155 0.16 +0.2 20,791 + MIT1002_04155 0.16 -0.1 20,791 + MIT1002_04155 0.16 +0.2 20,794 - MIT1002_04155 0.17 +0.1 20,833 - MIT1002_04155 0.19 +0.0 20,841 - MIT1002_04155 0.19 -1.2 20,846 - MIT1002_04155 0.20 +0.6 21,098 - MIT1002_04155 0.35 +0.3 21,100 + MIT1002_04155 0.35 -0.8 21,197 - MIT1002_04155 0.41 +1.0 21,205 - MIT1002_04155 0.41 +0.2 21,231 + MIT1002_04155 0.43 +0.9 21,257 - MIT1002_04155 0.44 +0.3 21,360 + MIT1002_04155 0.50 +0.4 21,360 + MIT1002_04155 0.50 -0.2 21,391 + MIT1002_04155 0.52 -0.6
Or see this region's nucleotide sequence