Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04134 and MIT1002_04135 are separated by 29 nucleotides
MIT1002_04134: MIT1002_04134 - Sporulation initiation inhibitor protein soj, at 1 to 927
_04134
MIT1002_04135: MIT1002_04135 - ParB/RepB/Spo0J family partition protein, at 957 to 2,048
_04135
Position (kb)
0
1 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 0.008 kb on + strand at 0.008 kb on + strand at 0.008 kb on + strand at 0.034 kb on - strand at 0.051 kb on + strand at 0.051 kb on + strand at 0.054 kb on + strand at 0.059 kb on - strand at 0.061 kb on + strand at 0.074 kb on - strand at 0.100 kb on - strand, within MIT1002_04134 at 0.116 kb on + strand, within MIT1002_04134 at 0.117 kb on - strand, within MIT1002_04134 at 0.119 kb on - strand, within MIT1002_04134 at 0.129 kb on + strand, within MIT1002_04134 at 0.129 kb on - strand, within MIT1002_04134 at 0.151 kb on + strand, within MIT1002_04134 at 0.172 kb on - strand, within MIT1002_04134 at 0.177 kb on - strand, within MIT1002_04134 at 0.227 kb on + strand, within MIT1002_04134 at 0.235 kb on + strand, within MIT1002_04134 at 0.235 kb on + strand, within MIT1002_04134 at 0.237 kb on + strand, within MIT1002_04134 at 0.266 kb on + strand, within MIT1002_04134 at 0.278 kb on - strand, within MIT1002_04134 at 0.304 kb on + strand, within MIT1002_04134 at 0.319 kb on + strand, within MIT1002_04134 at 0.345 kb on - strand, within MIT1002_04134 at 0.345 kb on - strand, within MIT1002_04134 at 0.352 kb on + strand, within MIT1002_04134 at 0.360 kb on + strand, within MIT1002_04134 at 0.370 kb on + strand, within MIT1002_04134 at 0.371 kb on + strand, within MIT1002_04134 at 0.371 kb on + strand, within MIT1002_04134 at 0.373 kb on + strand, within MIT1002_04134 at 0.373 kb on + strand, within MIT1002_04134 at 0.374 kb on + strand, within MIT1002_04134 at 0.383 kb on + strand, within MIT1002_04134 at 0.391 kb on - strand, within MIT1002_04134 at 0.411 kb on - strand, within MIT1002_04134 at 0.433 kb on + strand, within MIT1002_04134 at 0.433 kb on + strand, within MIT1002_04134 at 0.462 kb on + strand, within MIT1002_04134 at 0.474 kb on + strand, within MIT1002_04134 at 0.475 kb on + strand, within MIT1002_04134 at 0.482 kb on - strand, within MIT1002_04134 at 0.482 kb on - strand, within MIT1002_04134 at 0.483 kb on - strand, within MIT1002_04134 at 0.494 kb on + strand, within MIT1002_04134 at 0.529 kb on + strand, within MIT1002_04134 at 0.529 kb on + strand, within MIT1002_04134 at 0.537 kb on - strand, within MIT1002_04134 at 0.542 kb on + strand, within MIT1002_04134 at 0.542 kb on + strand, within MIT1002_04134 at 0.542 kb on + strand, within MIT1002_04134 at 0.570 kb on + strand, within MIT1002_04134 at 0.570 kb on + strand, within MIT1002_04134 at 0.590 kb on + strand, within MIT1002_04134 at 0.595 kb on + strand, within MIT1002_04134 at 0.599 kb on + strand, within MIT1002_04134 at 0.611 kb on + strand, within MIT1002_04134 at 0.611 kb on + strand, within MIT1002_04134 at 0.614 kb on + strand, within MIT1002_04134 at 0.614 kb on + strand, within MIT1002_04134 at 0.617 kb on - strand, within MIT1002_04134 at 0.619 kb on + strand, within MIT1002_04134 at 0.622 kb on - strand, within MIT1002_04134 at 0.622 kb on - strand, within MIT1002_04134 at 0.633 kb on + strand, within MIT1002_04134 at 0.633 kb on + strand, within MIT1002_04134 at 0.633 kb on + strand, within MIT1002_04134 at 0.633 kb on + strand, within MIT1002_04134 at 0.665 kb on + strand, within MIT1002_04134 at 0.673 kb on - strand, within MIT1002_04134 at 0.673 kb on - strand, within MIT1002_04134 at 0.682 kb on + strand, within MIT1002_04134 at 0.795 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.797 kb on + strand, within MIT1002_04134 at 0.803 kb on + strand, within MIT1002_04134 at 0.805 kb on - strand, within MIT1002_04134 at 0.805 kb on - strand, within MIT1002_04134 at 0.805 kb on - strand, within MIT1002_04134 at 0.816 kb on + strand, within MIT1002_04134 at 0.816 kb on + strand, within MIT1002_04134 at 0.821 kb on + strand, within MIT1002_04134 at 0.823 kb on - strand, within MIT1002_04134 at 0.824 kb on - strand, within MIT1002_04134 at 0.824 kb on - strand, within MIT1002_04134 at 0.847 kb on + strand at 0.894 kb on + strand at 0.899 kb on + strand at 0.899 kb on + strand at 0.902 kb on - strand at 0.907 kb on - strand at 0.912 kb on - strand at 0.921 kb on + strand at 0.946 kb on - strand at 0.949 kb on + strand at 0.955 kb on - strand at 0.959 kb on + strand at 0.960 kb on - strand at 0.967 kb on - strand at 1.005 kb on - strand at 1.068 kb on - strand, within MIT1002_04135 at 1.082 kb on + strand, within MIT1002_04135 at 1.090 kb on - strand, within MIT1002_04135 at 1.090 kb on - strand, within MIT1002_04135 at 1.144 kb on - strand, within MIT1002_04135 at 1.156 kb on + strand, within MIT1002_04135 at 1.157 kb on - strand, within MIT1002_04135 at 1.159 kb on + strand, within MIT1002_04135 at 1.165 kb on - strand, within MIT1002_04135 at 1.165 kb on - strand, within MIT1002_04135 at 1.165 kb on - strand, within MIT1002_04135 at 1.165 kb on - strand, within MIT1002_04135 at 1.188 kb on + strand, within MIT1002_04135 at 1.207 kb on + strand, within MIT1002_04135 at 1.278 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.280 kb on + strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.288 kb on - strand, within MIT1002_04135 at 1.300 kb on + strand, within MIT1002_04135 at 1.308 kb on - strand, within MIT1002_04135 at 1.310 kb on + strand, within MIT1002_04135 at 1.313 kb on - strand, within MIT1002_04135 at 1.318 kb on - strand, within MIT1002_04135 at 1.318 kb on - strand, within MIT1002_04135 at 1.318 kb on - strand, within MIT1002_04135 at 1.318 kb on - strand, within MIT1002_04135 at 1.322 kb on + strand, within MIT1002_04135 at 1.330 kb on + strand, within MIT1002_04135 at 1.330 kb on + strand, within MIT1002_04135 at 1.336 kb on + strand, within MIT1002_04135 at 1.340 kb on - strand, within MIT1002_04135 at 1.414 kb on - strand, within MIT1002_04135 at 1.415 kb on + strand, within MIT1002_04135 at 1.529 kb on + strand, within MIT1002_04135 at 1.564 kb on - strand, within MIT1002_04135 at 1.570 kb on - strand, within MIT1002_04135 at 1.613 kb on + strand, within MIT1002_04135 at 1.613 kb on + strand, within MIT1002_04135 at 1.613 kb on + strand, within MIT1002_04135 at 1.613 kb on - strand, within MIT1002_04135 at 1.624 kb on + strand, within MIT1002_04135 at 1.626 kb on - strand, within MIT1002_04135 at 1.626 kb on - strand, within MIT1002_04135 at 1.626 kb on - strand, within MIT1002_04135 at 1.632 kb on - strand, within MIT1002_04135 at 1.706 kb on + strand, within MIT1002_04135 at 1.709 kb on - strand, within MIT1002_04135 at 1.723 kb on + strand, within MIT1002_04135 at 1.744 kb on - strand, within MIT1002_04135 at 1.744 kb on - strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.757 kb on + strand, within MIT1002_04135 at 1.765 kb on + strand, within MIT1002_04135 at 1.765 kb on - strand, within MIT1002_04135 at 1.765 kb on - strand, within MIT1002_04135 at 1.765 kb on - strand, within MIT1002_04135 at 1.765 kb on - strand, within MIT1002_04135 at 1.765 kb on - strand, within MIT1002_04135 at 1.801 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.810 kb on + strand, within MIT1002_04135 at 1.818 kb on - strand, within MIT1002_04135 at 1.818 kb on - strand, within MIT1002_04135 at 1.818 kb on - strand, within MIT1002_04135 at 1.826 kb on - strand, within MIT1002_04135 at 1.860 kb on - strand, within MIT1002_04135 at 1.892 kb on - strand, within MIT1002_04135
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 8 + -1.7 8 + -0.4 8 + +0.7 34 - -1.6 51 + +1.5 51 + -2.3 54 + -1.3 59 - -0.7 61 + -1.2 74 - -1.1 100 - MIT1002_04134 0.11 -1.7 116 + MIT1002_04134 0.12 -2.1 117 - MIT1002_04134 0.13 -1.1 119 - MIT1002_04134 0.13 -2.1 129 + MIT1002_04134 0.14 -1.1 129 - MIT1002_04134 0.14 -1.9 151 + MIT1002_04134 0.16 -1.9 172 - MIT1002_04134 0.18 -0.4 177 - MIT1002_04134 0.19 -0.2 227 + MIT1002_04134 0.24 -0.1 235 + MIT1002_04134 0.25 -0.9 235 + MIT1002_04134 0.25 -2.8 237 + MIT1002_04134 0.25 -1.9 266 + MIT1002_04134 0.29 -0.4 278 - MIT1002_04134 0.30 -0.8 304 + MIT1002_04134 0.33 +0.1 319 + MIT1002_04134 0.34 -2.2 345 - MIT1002_04134 0.37 +0.3 345 - MIT1002_04134 0.37 -1.9 352 + MIT1002_04134 0.38 -1.3 360 + MIT1002_04134 0.39 -2.5 370 + MIT1002_04134 0.40 -1.9 371 + MIT1002_04134 0.40 -0.4 371 + MIT1002_04134 0.40 -1.8 373 + MIT1002_04134 0.40 -0.7 373 + MIT1002_04134 0.40 -2.5 374 + MIT1002_04134 0.40 -0.6 383 + MIT1002_04134 0.41 +0.2 391 - MIT1002_04134 0.42 -1.5 411 - MIT1002_04134 0.44 -0.9 433 + MIT1002_04134 0.47 -3.4 433 + MIT1002_04134 0.47 -2.6 462 + MIT1002_04134 0.50 -3.9 474 + MIT1002_04134 0.51 -3.1 475 + MIT1002_04134 0.51 -3.4 482 - MIT1002_04134 0.52 -0.4 482 - MIT1002_04134 0.52 +0.6 483 - MIT1002_04134 0.52 -1.4 494 + MIT1002_04134 0.53 -2.5 529 + MIT1002_04134 0.57 -1.3 529 + MIT1002_04134 0.57 -0.5 537 - MIT1002_04134 0.58 -1.3 542 + MIT1002_04134 0.58 -1.1 542 + MIT1002_04134 0.58 -2.6 542 + MIT1002_04134 0.58 -1.3 570 + MIT1002_04134 0.61 -0.6 570 + MIT1002_04134 0.61 +0.9 590 + MIT1002_04134 0.64 -0.4 595 + MIT1002_04134 0.64 -2.9 599 + MIT1002_04134 0.65 +2.1 611 + MIT1002_04134 0.66 +0.1 611 + MIT1002_04134 0.66 -3.5 614 + MIT1002_04134 0.66 +0.1 614 + MIT1002_04134 0.66 -2.3 617 - MIT1002_04134 0.66 -0.6 619 + MIT1002_04134 0.67 -0.8 622 - MIT1002_04134 0.67 -1.8 622 - MIT1002_04134 0.67 -1.4 633 + MIT1002_04134 0.68 -0.8 633 + MIT1002_04134 0.68 -0.6 633 + MIT1002_04134 0.68 -2.6 633 + MIT1002_04134 0.68 -1.0 665 + MIT1002_04134 0.72 -2.0 673 - MIT1002_04134 0.72 -0.2 673 - MIT1002_04134 0.72 +1.7 682 + MIT1002_04134 0.73 -2.7 795 + MIT1002_04134 0.86 -4.8 797 + MIT1002_04134 0.86 -0.4 797 + MIT1002_04134 0.86 +1.6 797 + MIT1002_04134 0.86 -1.9 797 + MIT1002_04134 0.86 -1.3 797 + MIT1002_04134 0.86 -3.1 797 + MIT1002_04134 0.86 -0.6 797 + MIT1002_04134 0.86 -2.7 797 + MIT1002_04134 0.86 -1.9 797 + MIT1002_04134 0.86 +0.1 797 + MIT1002_04134 0.86 -0.4 797 + MIT1002_04134 0.86 +0.3 797 + MIT1002_04134 0.86 -4.5 797 + MIT1002_04134 0.86 -3.4 803 + MIT1002_04134 0.87 -3.0 805 - MIT1002_04134 0.87 -2.0 805 - MIT1002_04134 0.87 -1.6 805 - MIT1002_04134 0.87 +1.9 816 + MIT1002_04134 0.88 -0.6 816 + MIT1002_04134 0.88 -1.4 821 + MIT1002_04134 0.88 -3.1 823 - MIT1002_04134 0.89 -1.4 824 - MIT1002_04134 0.89 -0.6 824 - MIT1002_04134 0.89 -0.1 847 + -1.3 894 + -0.1 899 + +1.2 899 + +0.6 902 - -2.7 907 - -1.8 912 - -2.9 921 + -1.2 946 - -2.7 949 + +0.6 955 - -1.2 959 + -0.4 960 - +0.2 967 - -1.0 1,005 - -3.1 1,068 - MIT1002_04135 0.10 +0.3 1,082 + MIT1002_04135 0.11 -1.2 1,090 - MIT1002_04135 0.12 -0.8 1,090 - MIT1002_04135 0.12 +0.6 1,144 - MIT1002_04135 0.17 -0.3 1,156 + MIT1002_04135 0.18 -1.2 1,157 - MIT1002_04135 0.18 -0.7 1,159 + MIT1002_04135 0.18 -1.8 1,165 - MIT1002_04135 0.19 +0.3 1,165 - MIT1002_04135 0.19 -0.2 1,165 - MIT1002_04135 0.19 -0.6 1,165 - MIT1002_04135 0.19 +0.3 1,188 + MIT1002_04135 0.21 -2.8 1,207 + MIT1002_04135 0.23 +0.9 1,278 + MIT1002_04135 0.29 -1.6 1,280 + MIT1002_04135 0.30 -1.6 1,280 + MIT1002_04135 0.30 -3.4 1,280 + MIT1002_04135 0.30 -1.2 1,280 + MIT1002_04135 0.30 -0.2 1,280 + MIT1002_04135 0.30 -0.3 1,280 + MIT1002_04135 0.30 -0.8 1,280 + MIT1002_04135 0.30 +0.6 1,280 + MIT1002_04135 0.30 -0.3 1,288 - MIT1002_04135 0.30 -0.7 1,288 - MIT1002_04135 0.30 -2.1 1,288 - MIT1002_04135 0.30 -0.7 1,288 - MIT1002_04135 0.30 -0.6 1,288 - MIT1002_04135 0.30 +0.7 1,288 - MIT1002_04135 0.30 -2.4 1,288 - MIT1002_04135 0.30 -0.4 1,288 - MIT1002_04135 0.30 -1.0 1,288 - MIT1002_04135 0.30 -1.2 1,300 + MIT1002_04135 0.31 -1.2 1,308 - MIT1002_04135 0.32 +0.3 1,310 + MIT1002_04135 0.32 +0.1 1,313 - MIT1002_04135 0.33 -1.1 1,318 - MIT1002_04135 0.33 -1.7 1,318 - MIT1002_04135 0.33 -2.3 1,318 - MIT1002_04135 0.33 +0.9 1,318 - MIT1002_04135 0.33 +0.7 1,322 + MIT1002_04135 0.33 -1.6 1,330 + MIT1002_04135 0.34 +1.5 1,330 + MIT1002_04135 0.34 +0.6 1,336 + MIT1002_04135 0.35 -0.9 1,340 - MIT1002_04135 0.35 -1.2 1,414 - MIT1002_04135 0.42 +0.6 1,415 + MIT1002_04135 0.42 -0.4 1,529 + MIT1002_04135 0.52 +0.1 1,564 - MIT1002_04135 0.56 +0.1 1,570 - MIT1002_04135 0.56 -1.9 1,613 + MIT1002_04135 0.60 +1.3 1,613 + MIT1002_04135 0.60 +0.4 1,613 + MIT1002_04135 0.60 +0.3 1,613 - MIT1002_04135 0.60 -0.3 1,624 + MIT1002_04135 0.61 -1.2 1,626 - MIT1002_04135 0.61 -2.4 1,626 - MIT1002_04135 0.61 -0.8 1,626 - MIT1002_04135 0.61 -1.3 1,632 - MIT1002_04135 0.62 +0.1 1,706 + MIT1002_04135 0.69 -2.1 1,709 - MIT1002_04135 0.69 -0.4 1,723 + MIT1002_04135 0.70 -0.4 1,744 - MIT1002_04135 0.72 -0.4 1,744 - MIT1002_04135 0.72 -1.4 1,757 + MIT1002_04135 0.73 -2.2 1,757 + MIT1002_04135 0.73 +0.0 1,757 + MIT1002_04135 0.73 -0.3 1,757 + MIT1002_04135 0.73 +0.5 1,757 + MIT1002_04135 0.73 -2.3 1,757 + MIT1002_04135 0.73 +0.7 1,757 + MIT1002_04135 0.73 -1.5 1,757 + MIT1002_04135 0.73 -0.0 1,757 + MIT1002_04135 0.73 -1.3 1,757 + MIT1002_04135 0.73 -1.1 1,757 + MIT1002_04135 0.73 -1.0 1,765 + MIT1002_04135 0.74 -0.3 1,765 - MIT1002_04135 0.74 -1.2 1,765 - MIT1002_04135 0.74 -1.3 1,765 - MIT1002_04135 0.74 -1.2 1,765 - MIT1002_04135 0.74 +0.1 1,765 - MIT1002_04135 0.74 +0.8 1,801 + MIT1002_04135 0.77 +1.1 1,810 + MIT1002_04135 0.78 +0.1 1,810 + MIT1002_04135 0.78 +0.6 1,810 + MIT1002_04135 0.78 -1.4 1,810 + MIT1002_04135 0.78 -0.1 1,810 + MIT1002_04135 0.78 -1.1 1,810 + MIT1002_04135 0.78 -2.3 1,810 + MIT1002_04135 0.78 -2.2 1,810 + MIT1002_04135 0.78 -1.6 1,810 + MIT1002_04135 0.78 -1.8 1,810 + MIT1002_04135 0.78 -1.8 1,818 - MIT1002_04135 0.79 -3.1 1,818 - MIT1002_04135 0.79 -1.4 1,818 - MIT1002_04135 0.79 -2.8 1,826 - MIT1002_04135 0.80 +0.1 1,860 - MIT1002_04135 0.83 -0.6 1,892 - MIT1002_04135 0.86 -1.4
Or see this region's nucleotide sequence