Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04095

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,592,862	-		MIT1002_04093	0.86	-2.8
4,592,901	+				-1.2
4,592,909	-				-1.3
4,592,909	-				-0.7
4,593,018	-				-0.1
4,593,029	-				-1.4
4,593,095	-		MIT1002_04094	0.32	+0.1
4,593,111	+		MIT1002_04094	0.37	-1.3
4,593,118	+		MIT1002_04094	0.40	-0.6
4,593,135	+		MIT1002_04094	0.45	-2.0
4,593,199	-		MIT1002_04094	0.67	-1.0
4,593,200	-		MIT1002_04094	0.68	-0.3
4,593,354	+				-1.3
4,593,371	-				-0.5
4,593,431	+				+0.4
4,593,431	+				-0.2
4,593,439	-				+0.7
4,593,447	+				-3.1
4,593,528	+				-0.2
4,593,536	-				+0.3
4,593,537	-				-1.7
4,593,612	-				+0.5
4,593,630	+				+0.5
4,593,796	-		MIT1002_04095	0.29	+0.7
4,593,814	+		MIT1002_04095	0.37	+0.0
4,593,835	+		MIT1002_04095	0.46	+0.1
4,593,835	+		MIT1002_04095	0.46	-1.2
4,593,849	+		MIT1002_04095	0.52	-0.7
4,593,849	+		MIT1002_04095	0.52	-2.6
4,594,044	+				+1.0
4,594,049	+				-0.1
4,594,049	+				+1.2
4,594,059	+				-0.4
4,594,112	-				+0.0
4,594,171	+				+0.2
4,594,179	-				-0.0
4,594,299	-		MIT1002_04096	0.15	+0.1
4,594,318	+		MIT1002_04096	0.22	-0.0
4,594,346	-		MIT1002_04096	0.32	-1.8
4,594,349	-		MIT1002_04096	0.33	+0.6
4,594,404	+		MIT1002_04096	0.52	-1.4
4,594,406	+		MIT1002_04096	0.53	-0.7
4,594,412	-		MIT1002_04096	0.55	-0.7
4,594,414	-		MIT1002_04096	0.56	-1.8
4,594,520	+				-0.3
4,594,563	+				-2.1
4,594,631	-				-0.7
4,594,632	+				-0.5
4,594,714	+		MIT1002_04097	0.14	-0.7
4,594,714	+		MIT1002_04097	0.14	-1.0
4,594,750	-		MIT1002_04097	0.17	-0.1
4,594,781	+		MIT1002_04097	0.19	+1.6
4,594,789	-		MIT1002_04097	0.19	+0.5
4,594,860	+		MIT1002_04097	0.25	+0.7
4,594,923	+		MIT1002_04097	0.29	-2.1
4,594,959	+		MIT1002_04097	0.32	+0.2