Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03904

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,373,701	-		MIT1002_03903	0.60	+0.1
4,373,712	+		MIT1002_03903	0.61	-1.2
4,373,744	+		MIT1002_03903	0.63	-1.0
4,373,851	-		MIT1002_03903	0.71	-0.8
4,373,894	+		MIT1002_03903	0.74	-0.6
4,373,902	-		MIT1002_03903	0.74	+0.5
4,373,939	+		MIT1002_03903	0.77	+0.1
4,373,944	+		MIT1002_03903	0.77	+0.0
4,374,005	+		MIT1002_03903	0.81	+0.1
4,374,054	-		MIT1002_03903	0.85	-1.6
4,374,112	+		MIT1002_03903	0.89	+0.1
4,374,117	+		MIT1002_03903	0.89	-0.8
4,374,120	-		MIT1002_03903	0.89	-3.1
4,374,181	+				-0.5
4,374,238	+				-1.2
4,374,240	+				-0.8
4,374,246	-				-2.5
4,374,287	+				-1.8
4,374,292	-				-1.3
4,374,311	-				-0.4
4,374,572	+				-0.9
4,374,591	+				+0.7
4,374,591	+				-0.3
4,374,591	+				-1.7
4,374,591	+				-1.4
4,374,591	+				-2.4
4,374,591	+				-1.3
4,374,599	-				-1.2
4,374,599	-				-2.0
4,374,599	-				-2.3
4,374,674	+				-3.3
4,374,743	+		MIT1002_03904	0.15	-2.8
4,374,748	+		MIT1002_03904	0.15	+0.1
4,374,756	-		MIT1002_03904	0.16	-2.1
4,374,756	-		MIT1002_03904	0.16	-0.9
4,374,821	+		MIT1002_03904	0.22	-1.0
4,374,857	+		MIT1002_03904	0.25	-3.1
4,374,973	+		MIT1002_03904	0.35	-0.6
4,375,054	+		MIT1002_03904	0.42	-1.9
4,375,084	-		MIT1002_03904	0.45	-1.4
4,375,100	+		MIT1002_03904	0.46	-2.2
4,375,102	-		MIT1002_03904	0.46	+0.4
4,375,107	-		MIT1002_03904	0.47	-1.7
4,375,107	-		MIT1002_03904	0.47	-2.8
4,375,123	+		MIT1002_03904	0.48	-0.7
4,375,133	+		MIT1002_03904	0.49	-2.3
4,375,161	-		MIT1002_03904	0.51	-2.6
4,375,175	-		MIT1002_03904	0.52	-1.4
4,375,177	+		MIT1002_03904	0.53	-2.5
4,375,192	+		MIT1002_03904	0.54	-2.6
4,375,258	+		MIT1002_03904	0.60	-1.7
4,375,407	-		MIT1002_03904	0.73	-1.0
4,375,462	+		MIT1002_03904	0.77	-1.5
4,375,474	+		MIT1002_03904	0.79	-2.1
4,375,514	+		MIT1002_03904	0.82	-2.5
4,375,560	-		MIT1002_03904	0.86	-0.9
4,375,562	+		MIT1002_03904	0.86	-3.0
4,375,626	+				-2.0
4,375,636	+				-0.3
4,375,665	-				-0.3
4,375,769	+				-1.0
4,375,769	+				-0.4
4,375,777	-				-0.1
4,375,779	+				-0.7
4,375,779	+				-2.8
4,375,787	-				-0.4
4,375,787	-				-0.6
4,375,787	-				-2.0
4,375,787	-				-0.4
4,375,788	-				-1.7
4,375,890	-				-1.9
4,375,910	+				-0.7
4,375,918	-				-1.7
4,376,025	+		MIT1002_03905	0.14	-0.3
4,376,067	+		MIT1002_03905	0.16	-1.1
4,376,072	+		MIT1002_03905	0.16	-0.8
4,376,072	+		MIT1002_03905	0.16	+0.1
4,376,085	-		MIT1002_03905	0.17	+0.5
4,376,140	+		MIT1002_03905	0.20	+0.1
4,376,183	-		MIT1002_03905	0.22	-1.6
4,376,317	+		MIT1002_03905	0.29	-1.5
4,376,344	-		MIT1002_03905	0.30	-0.9
4,376,372	+		MIT1002_03905	0.32	+0.7
4,376,372	+		MIT1002_03905	0.32	+0.1
4,376,397	+		MIT1002_03905	0.33	-1.6
4,376,460	+		MIT1002_03905	0.36	-1.2
4,376,516	+		MIT1002_03905	0.39	-0.8
4,376,524	-		MIT1002_03905	0.40	+0.8
4,376,524	-		MIT1002_03905	0.40	+0.2
4,376,559	+		MIT1002_03905	0.42	+0.5
4,376,564	-		MIT1002_03905	0.42	-0.4
4,376,618	+		MIT1002_03905	0.45	-0.7
4,376,637	+		MIT1002_03905	0.46	-1.9