Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03866

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,329,446	+				+0.4
4,329,454	-				-0.1
4,329,455	-				-0.3
4,329,456	-				+0.3
4,329,570	+				-0.1
4,329,636	+		MIT1002_03865	0.11	+0.9
4,329,636	+		MIT1002_03865	0.11	-0.6
4,329,637	+		MIT1002_03865	0.11	-0.1
4,329,644	-		MIT1002_03865	0.12	-1.0
4,329,644	-		MIT1002_03865	0.12	+1.1
4,329,644	-		MIT1002_03865	0.12	+2.1
4,329,644	-		MIT1002_03865	0.12	+0.2
4,329,681	+		MIT1002_03865	0.16	-0.5
4,329,691	+		MIT1002_03865	0.17	-1.8
4,329,691	+		MIT1002_03865	0.17	-0.3
4,329,691	+		MIT1002_03865	0.17	+1.8
4,329,691	+		MIT1002_03865	0.17	-0.9
4,329,694	-		MIT1002_03865	0.18	-1.0
4,329,696	+		MIT1002_03865	0.18	-1.1
4,329,699	-		MIT1002_03865	0.18	-0.9
4,329,699	-		MIT1002_03865	0.18	+0.3
4,329,701	-		MIT1002_03865	0.18	-1.0
4,329,764	-		MIT1002_03865	0.26	-0.9
4,329,779	-		MIT1002_03865	0.27	+0.9
4,329,792	+		MIT1002_03865	0.29	+0.7
4,329,794	+		MIT1002_03865	0.29	-0.6
4,329,800	-		MIT1002_03865	0.30	-0.8
4,329,826	+		MIT1002_03865	0.33	-1.1
4,329,826	+		MIT1002_03865	0.33	+1.1
4,329,834	-		MIT1002_03865	0.34	+0.4
4,329,834	-		MIT1002_03865	0.34	+1.2
4,329,876	+		MIT1002_03865	0.38	-0.3
4,329,876	+		MIT1002_03865	0.38	-1.7
4,329,876	+		MIT1002_03865	0.38	-1.9
4,329,876	+		MIT1002_03865	0.38	-1.5
4,329,884	-		MIT1002_03865	0.39	+0.2
4,329,884	-		MIT1002_03865	0.39	+1.0
4,329,884	-		MIT1002_03865	0.39	+0.0
4,329,884	-		MIT1002_03865	0.39	+0.1
4,329,912	-		MIT1002_03865	0.42	+0.3
4,329,912	-		MIT1002_03865	0.42	+0.1
4,329,990	-		MIT1002_03865	0.51	-0.7
4,330,019	+		MIT1002_03865	0.55	-1.1
4,330,073	-		MIT1002_03865	0.61	-0.4
4,330,073	-		MIT1002_03865	0.61	-1.9
4,330,129	-		MIT1002_03865	0.67	-0.4
4,330,148	+		MIT1002_03865	0.69	-2.2
4,330,175	-		MIT1002_03865	0.72	+0.7
4,330,189	+		MIT1002_03865	0.74	+0.3
4,330,215	+		MIT1002_03865	0.77	+1.0
4,330,224	-		MIT1002_03865	0.78	+1.4
4,330,224	-		MIT1002_03865	0.78	+0.8
4,330,269	+		MIT1002_03865	0.83	-0.4
4,330,295	+		MIT1002_03865	0.86	+0.4
4,330,303	-		MIT1002_03865	0.87	-0.0
4,330,308	-		MIT1002_03865	0.87	+0.1
4,330,405	-				-1.2
4,330,446	-				-0.3
4,330,536	-				+0.5
4,330,572	-				-1.5
4,330,607	-				-1.4
4,330,672	+				-1.5
4,330,715	+		MIT1002_03866	0.11	+0.5
4,330,751	+		MIT1002_03866	0.13	+0.4
4,330,893	+		MIT1002_03866	0.18	-0.5
4,330,895	+		MIT1002_03866	0.18	+0.7
4,330,920	-		MIT1002_03866	0.19	+0.8
4,330,943	-		MIT1002_03866	0.20	-0.1
4,330,946	+		MIT1002_03866	0.20	+0.1
4,331,028	+		MIT1002_03866	0.23	-0.3
4,331,054	-		MIT1002_03866	0.24	+1.7
4,331,127	+		MIT1002_03866	0.27	+0.2
4,331,157	-		MIT1002_03866	0.28	+0.6
4,331,166	+		MIT1002_03866	0.29	-0.1
4,331,171	+		MIT1002_03866	0.29	-0.0
4,331,174	-		MIT1002_03866	0.29	-1.1
4,331,206	+		MIT1002_03866	0.30	-1.8
4,331,233	-		MIT1002_03866	0.31	+0.2
4,331,245	+		MIT1002_03866	0.32	+0.2
4,331,297	-		MIT1002_03866	0.34	+0.1
4,331,307	-		MIT1002_03866	0.34	-0.4
4,331,376	-		MIT1002_03866	0.37	+0.4
4,331,393	+		MIT1002_03866	0.37	-1.1
4,331,393	+		MIT1002_03866	0.37	+1.1
4,331,398	-		MIT1002_03866	0.38	+0.2
4,331,400	+		MIT1002_03866	0.38	+0.2
4,331,401	-		MIT1002_03866	0.38	+0.1
4,331,418	-		MIT1002_03866	0.38	+0.3
4,331,477	-		MIT1002_03866	0.41	-2.3
4,331,479	+		MIT1002_03866	0.41	-0.3
4,331,492	-		MIT1002_03866	0.41	+1.0
4,331,515	+		MIT1002_03866	0.42	+0.1
4,331,515	+		MIT1002_03866	0.42	-0.1
4,331,515	+		MIT1002_03866	0.42	+1.9
4,331,515	+		MIT1002_03866	0.42	+0.2
4,331,518	-		MIT1002_03866	0.42	+0.5
4,331,523	-		MIT1002_03866	0.42	-1.6
4,331,523	-		MIT1002_03866	0.42	+0.5
4,331,523	-		MIT1002_03866	0.42	-0.9
4,331,541	+		MIT1002_03866	0.43	-0.1
4,331,600	-		MIT1002_03866	0.45	+0.4
4,331,669	-		MIT1002_03866	0.48	+0.0
4,331,669	-		MIT1002_03866	0.48	+1.5
4,331,669	-		MIT1002_03866	0.48	+0.0
4,331,669	-		MIT1002_03866	0.48	+1.1
4,331,690	+		MIT1002_03866	0.49	-1.5
4,331,696	+		MIT1002_03866	0.49	-2.0
4,331,796	+		MIT1002_03866	0.53	-0.9
4,331,915	+		MIT1002_03866	0.57	+1.0
4,331,976	+		MIT1002_03866	0.60	-0.1
4,331,979	-		MIT1002_03866	0.60	-0.6
4,331,999	+		MIT1002_03866	0.61	+0.1
4,332,007	-		MIT1002_03866	0.61	-0.1
4,332,017	-		MIT1002_03866	0.61	+0.9
4,332,019	-		MIT1002_03866	0.61	+1.1
4,332,045	+		MIT1002_03866	0.62	+1.0
4,332,055	-		MIT1002_03866	0.63	-0.6
4,332,065	+		MIT1002_03866	0.63	+0.0
4,332,075	+		MIT1002_03866	0.64	+0.7
4,332,076	+		MIT1002_03866	0.64	+0.9
4,332,164	+		MIT1002_03866	0.67	+0.1
4,332,178	+		MIT1002_03866	0.67	-0.6
4,332,240	-		MIT1002_03866	0.70	-1.5
4,332,332	+		MIT1002_03866	0.73	+0.3
4,332,367	+		MIT1002_03866	0.75	-1.2
4,332,367	+		MIT1002_03866	0.75	+0.5
4,332,367	+		MIT1002_03866	0.75	+0.3
4,332,367	+		MIT1002_03866	0.75	+1.2
4,332,375	-		MIT1002_03866	0.75	+0.9
4,332,375	-		MIT1002_03866	0.75	+1.1
4,332,375	-		MIT1002_03866	0.75	-0.2
4,332,375	-		MIT1002_03866	0.75	+0.0
4,332,380	-		MIT1002_03866	0.75	+1.2
4,332,390	+		MIT1002_03866	0.76	+0.7
4,332,402	+		MIT1002_03866	0.76	+1.7
4,332,503	+		MIT1002_03866	0.80	-0.6
4,332,503	+		MIT1002_03866	0.80	+1.6
4,332,511	-		MIT1002_03866	0.80	+0.7
4,332,516	-		MIT1002_03866	0.80	+0.7
4,332,538	-		MIT1002_03866	0.81	+0.4
4,332,623	-		MIT1002_03866	0.85	-0.1
4,332,683	-		MIT1002_03866	0.87	-1.2
4,332,702	+		MIT1002_03866	0.88	-1.5
4,332,709	+		MIT1002_03866	0.88	-0.3
4,332,729	+		MIT1002_03866	0.89	+0.0
4,332,930	+				+0.2
4,332,943	-				+0.5
4,332,958	-				-0.1
4,332,958	-				+1.0
4,332,997	-				-0.2
4,333,014	+				+1.2
4,333,038	+				-0.9
4,333,053	+				+1.1
4,333,063	+				+0.6
4,333,063	+				+1.1
4,333,063	+				+0.5
4,333,063	+				-1.4
4,333,063	+				-0.1
4,333,063	+				+1.6
4,333,071	-				-1.6
4,333,071	-				-1.7
4,333,301	+				-1.0
4,333,356	+				+0.4
4,333,464	-				+0.8
4,333,485	-				-1.1
4,333,536	+				+1.0
4,333,575	-				+0.7
4,333,653	+				+0.1
4,333,756	+				-0.5
4,333,756	+				+0.8
4,333,769	-				+0.1
4,333,818	-				-1.0
4,333,877	-				-0.7
4,333,882	-				+1.7
4,333,886	+				-0.6
4,333,908	-				-0.4
4,333,915	-				+2.0
4,333,922	+				+1.3