Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03852

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,314,854	+		MIT1002_03851	0.32	+0.2
4,314,931	-		MIT1002_03851	0.38	-0.1
4,314,945	-		MIT1002_03851	0.39	-1.1
4,314,952	-		MIT1002_03851	0.39	-0.4
4,315,006	+		MIT1002_03851	0.43	+0.3
4,315,087	+		MIT1002_03851	0.50	+0.1
4,315,105	-		MIT1002_03851	0.51	+1.1
4,315,144	-		MIT1002_03851	0.54	+0.1
4,315,198	+		MIT1002_03851	0.58	-0.2
4,315,204	-		MIT1002_03851	0.59	+0.4
4,315,234	+		MIT1002_03851	0.61	-1.5
4,315,297	+		MIT1002_03851	0.66	-2.3
4,315,297	+		MIT1002_03851	0.66	-1.2
4,315,386	-		MIT1002_03851	0.72	+0.0
4,315,397	-		MIT1002_03851	0.73	+0.7
4,315,469	+		MIT1002_03851	0.79	+0.4
4,315,469	+		MIT1002_03851	0.79	+0.2
4,315,469	+		MIT1002_03851	0.79	-0.0
4,315,469	+		MIT1002_03851	0.79	-0.0
4,315,469	+		MIT1002_03851	0.79	-0.7
4,315,477	-		MIT1002_03851	0.79	+0.4
4,315,477	-		MIT1002_03851	0.79	+1.2
4,315,479	+		MIT1002_03851	0.80	-0.5
4,315,487	-		MIT1002_03851	0.80	+1.2
4,315,487	-		MIT1002_03851	0.80	+0.6
4,315,549	+		MIT1002_03851	0.85	-0.9
4,315,549	+		MIT1002_03851	0.85	-1.3
4,315,565	+		MIT1002_03851	0.86	-1.4
4,315,596	-		MIT1002_03851	0.89	+1.1
4,315,603	-		MIT1002_03851	0.89	-0.5
4,315,678	+				+0.3
4,315,688	-				+1.3
4,315,695	+				-0.2
4,315,695	+				+1.5
4,315,695	+				+0.7
4,315,695	+				-2.5
4,315,695	+				+0.3
4,315,703	-				-0.5
4,315,703	-				+0.0
4,315,703	-				+1.0
4,315,703	-				+1.2
4,315,834	+				-0.3
4,315,836	-				+0.4
4,315,870	+				+0.8
4,315,950	+		MIT1002_03852	0.26	+1.1
4,315,958	-		MIT1002_03852	0.28	-0.1
4,315,958	-		MIT1002_03852	0.28	+0.6
4,316,014	+		MIT1002_03852	0.43	-0.8
4,316,022	-		MIT1002_03852	0.46	-0.5
4,316,024	+		MIT1002_03852	0.46	+0.4
4,316,024	+		MIT1002_03852	0.46	-0.8
4,316,024	+		MIT1002_03852	0.46	-2.6
4,316,049	+		MIT1002_03852	0.53	+0.7
4,316,105	-		MIT1002_03852	0.68	+0.3
4,316,167	+		MIT1002_03852	0.85	-0.8
4,316,168	-		MIT1002_03852	0.85	-0.6
4,316,173	-		MIT1002_03852	0.86	-0.5
4,316,193	+				+0.7
4,316,218	+				+0.1
4,316,226	-				-0.6
4,316,227	+				+0.5
4,316,339	+				-0.2
4,316,347	-				-0.9
4,316,347	-				-0.2
4,316,421	+				-0.6
4,316,451	-				-1.0
4,316,557	-		MIT1002_03853	0.12	-0.7
4,316,562	-		MIT1002_03853	0.13	+0.4
4,316,562	-		MIT1002_03853	0.13	+1.8
4,316,571	-		MIT1002_03853	0.13	+0.5
4,316,571	-		MIT1002_03853	0.13	-1.9
4,316,626	-		MIT1002_03853	0.16	+2.0
4,316,656	+		MIT1002_03853	0.17	-0.8
4,316,656	+		MIT1002_03853	0.17	-0.1
4,316,661	+		MIT1002_03853	0.17	+0.5
4,316,661	+		MIT1002_03853	0.17	-0.4
4,316,671	+		MIT1002_03853	0.18	+0.0
4,316,686	-		MIT1002_03853	0.19	-0.6
4,316,706	+		MIT1002_03853	0.19	-1.0
4,316,706	+		MIT1002_03853	0.19	+1.5
4,316,714	+		MIT1002_03853	0.20	+0.2
4,316,714	-		MIT1002_03853	0.20	-1.2
4,316,714	-		MIT1002_03853	0.20	+0.2
4,316,719	-		MIT1002_03853	0.20	+0.0
4,316,722	-		MIT1002_03853	0.20	-0.1
4,316,727	+		MIT1002_03853	0.20	-1.3
4,316,734	+		MIT1002_03853	0.21	-1.0
4,316,889	+		MIT1002_03853	0.28	-1.3
4,316,894	-		MIT1002_03853	0.28	+0.1
4,316,914	-		MIT1002_03853	0.29	-0.5
4,316,936	-		MIT1002_03853	0.30	-2.1
4,316,968	+		MIT1002_03853	0.32	-0.8
4,316,968	+		MIT1002_03853	0.32	-1.7
4,316,976	-		MIT1002_03853	0.32	+0.5
4,316,978	+		MIT1002_03853	0.32	-0.5
4,317,058	-		MIT1002_03853	0.36	-1.7
4,317,087	+		MIT1002_03853	0.37	-0.9
4,317,087	+		MIT1002_03853	0.37	-0.5