Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03746

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,186,928	+		MIT1002_03745	0.62	-0.3
4,186,941	+		MIT1002_03745	0.62	-0.6
4,186,941	+		MIT1002_03745	0.62	+0.7
4,186,962	+		MIT1002_03745	0.63	+1.4
4,186,970	-		MIT1002_03745	0.64	+0.4
4,186,976	+		MIT1002_03745	0.64	-1.8
4,186,984	-		MIT1002_03745	0.65	+0.8
4,187,055	+		MIT1002_03745	0.68	-0.8
4,187,063	-		MIT1002_03745	0.68	+0.1
4,187,068	-		MIT1002_03745	0.69	+2.0
4,187,068	-		MIT1002_03745	0.69	+0.3
4,187,072	-		MIT1002_03745	0.69	-1.3
4,187,085	-		MIT1002_03745	0.69	-0.1
4,187,103	-		MIT1002_03745	0.70	-0.8
4,187,117	-		MIT1002_03745	0.71	-0.7
4,187,295	-		MIT1002_03745	0.80	+0.2
4,187,297	+		MIT1002_03745	0.80	-1.0
4,187,316	-		MIT1002_03745	0.81	-0.1
4,187,328	+		MIT1002_03745	0.81	+1.5
4,187,337	+		MIT1002_03745	0.82	-2.9
4,187,356	+		MIT1002_03745	0.83	-0.4
4,187,448	-		MIT1002_03745	0.87	+3.0
4,187,515	+				+0.5
4,187,530	-				+0.6
4,187,576	+				+0.6
4,187,576	+				-0.5
4,187,584	-				+1.7
4,187,605	+				+0.3
4,187,619	+				+0.4
4,187,624	+				-0.4
4,187,632	-				-0.0
4,187,651	+				-0.1
4,187,660	-				-0.6
4,187,680	+				-0.4
4,187,680	+				+1.2
4,187,701	-				-0.4
4,187,758	+				-0.5
4,187,772	-				+0.8
4,187,806	+				-0.6
4,187,814	-				-0.8
4,187,814	-				-0.6
4,187,814	-				+1.4
4,187,816	-				+0.1
4,187,821	+				+2.1
4,187,870	+				-0.7
4,187,878	-				+0.1
4,187,888	-				-1.0
4,187,915	-		MIT1002_03746	0.11	+0.0
4,187,931	-		MIT1002_03746	0.13	-0.4
4,187,967	-		MIT1002_03746	0.18	-0.5
4,188,046	+		MIT1002_03746	0.30	+0.4
4,188,048	-		MIT1002_03746	0.30	-1.6
4,188,048	-		MIT1002_03746	0.30	-1.3
4,188,048	-		MIT1002_03746	0.30	+2.9
4,188,054	-		MIT1002_03746	0.31	-0.1
4,188,179	+		MIT1002_03746	0.49	-0.4
4,188,237	+		MIT1002_03746	0.57	-0.7
4,188,279	-		MIT1002_03746	0.63	-0.4
4,188,311	-		MIT1002_03746	0.68	-0.8
4,188,339	+		MIT1002_03746	0.72	-2.3
4,188,417	+		MIT1002_03746	0.83	+0.3
4,188,417	+		MIT1002_03746	0.83	+2.0
4,188,533	-				+0.7
4,188,634	+		MIT1002_03747	0.27	-0.7
4,188,634	+		MIT1002_03747	0.27	+0.7
4,188,634	+		MIT1002_03747	0.27	-1.0
4,188,634	+		MIT1002_03747	0.27	+0.1
4,188,639	+		MIT1002_03747	0.28	+0.4
4,188,642	-		MIT1002_03747	0.29	-0.3
4,188,642	-		MIT1002_03747	0.29	+0.7
4,188,642	-		MIT1002_03747	0.29	-0.3
4,188,642	-		MIT1002_03747	0.29	-0.4
4,188,642	-		MIT1002_03747	0.29	-0.0
4,188,642	-		MIT1002_03747	0.29	-0.9
4,188,657	-		MIT1002_03747	0.32	-1.4
4,188,695	+		MIT1002_03747	0.42	+0.9
4,188,702	+		MIT1002_03747	0.44	-0.3
4,188,711	-		MIT1002_03747	0.46	-2.3
4,188,713	+		MIT1002_03747	0.46	+0.4
4,188,714	-		MIT1002_03747	0.47	+0.3
4,188,764	+		MIT1002_03747	0.59	+1.8
4,188,764	+		MIT1002_03747	0.59	+0.8
4,188,772	-		MIT1002_03747	0.61	-0.3
4,188,772	-		MIT1002_03747	0.61	-0.6
4,188,778	-		MIT1002_03747	0.63	+0.7
4,188,803	-		MIT1002_03747	0.69	-0.5
4,188,825	+		MIT1002_03747	0.74	+1.1
4,188,833	-		MIT1002_03747	0.76	-2.2
4,188,848	-		MIT1002_03747	0.80	-0.7
4,188,903	+				-1.9
4,188,913	+				-1.4
4,188,933	-				+0.0
4,188,941	+				+1.5
4,188,962	-				+0.7
4,188,978	-				-0.5
4,188,981	-				-0.6
4,188,991	+				+1.7