Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03642

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,071,781	-		MIT1002_03641	0.30	-0.9
4,071,909	-		MIT1002_03641	0.42	-0.7
4,071,959	-		MIT1002_03641	0.46	+0.0
4,071,986	+		MIT1002_03641	0.49	-0.9
4,071,986	+		MIT1002_03641	0.49	-0.1
4,072,024	+		MIT1002_03641	0.52	-1.8
4,072,071	+		MIT1002_03641	0.57	-0.8
4,072,108	+		MIT1002_03641	0.60	-0.8
4,072,212	+		MIT1002_03641	0.70	-3.0
4,072,240	+		MIT1002_03641	0.72	+0.1
4,072,291	-		MIT1002_03641	0.77	-0.2
4,072,292	+		MIT1002_03641	0.77	+0.9
4,072,380	-		MIT1002_03641	0.85	+1.3
4,072,380	-		MIT1002_03641	0.85	-0.1
4,072,380	-		MIT1002_03641	0.85	-0.0
4,072,380	-		MIT1002_03641	0.85	+1.2
4,072,403	-		MIT1002_03641	0.88	+0.4
4,072,405	+		MIT1002_03641	0.88	-1.2
4,072,431	-				-1.1
4,072,431	-				+0.4
4,072,460	-				+2.0
4,072,487	+				+0.1
4,072,502	+				-0.1
4,072,502	+				+0.5
4,072,616	-				+1.4
4,072,616	-				-0.4
4,072,639	+				-2.1
4,072,712	+				+0.6
4,072,712	+				-0.4
4,072,719	+				-0.9
4,072,720	-				-0.3
4,072,727	-				-0.3
4,072,805	+				+0.1
4,072,844	-				-0.0
4,072,904	-				-0.3
4,072,922	-				-0.9
4,072,959	+				+1.3
4,072,959	+				-1.4
4,072,959	+				-0.1
4,072,959	+				-0.0
4,072,959	+				-1.9
4,072,968	-				-0.6
4,073,074	+				+0.1
4,073,152	-		MIT1002_03642	0.12	-1.0
4,073,152	-		MIT1002_03642	0.12	-1.1
4,073,159	-		MIT1002_03642	0.12	-0.4
4,073,159	-		MIT1002_03642	0.12	-0.0
4,073,175	-		MIT1002_03642	0.12	-0.5
4,073,215	+		MIT1002_03642	0.13	+0.5
4,073,217	+		MIT1002_03642	0.13	-0.4
4,073,217	+		MIT1002_03642	0.13	-1.4
4,073,225	-		MIT1002_03642	0.14	+2.0
4,073,280	-		MIT1002_03642	0.15	+0.9
4,073,302	-		MIT1002_03642	0.16	+0.9
4,073,340	+		MIT1002_03642	0.17	-1.0
4,073,348	-		MIT1002_03642	0.17	-1.4
4,073,385	+		MIT1002_03642	0.19	+0.1
4,073,425	+		MIT1002_03642	0.20	-0.3
4,073,550	-		MIT1002_03642	0.23	+1.6
4,073,558	+		MIT1002_03642	0.24	+1.2
4,073,566	-		MIT1002_03642	0.24	+0.4
4,073,566	-		MIT1002_03642	0.24	-0.4
4,073,630	+		MIT1002_03642	0.26	+0.7
4,073,638	-		MIT1002_03642	0.26	-0.3
4,073,652	+		MIT1002_03642	0.27	-1.5
4,073,652	+		MIT1002_03642	0.27	-0.0
4,073,659	+		MIT1002_03642	0.27	-0.6
4,073,659	+		MIT1002_03642	0.27	-0.4
4,073,689	+		MIT1002_03642	0.28	-0.7
4,073,703	-		MIT1002_03642	0.28	-0.7
4,073,776	-		MIT1002_03642	0.30	+0.7
4,073,806	+		MIT1002_03642	0.31	-0.2
4,073,814	-		MIT1002_03642	0.31	-0.6
4,073,913	-		MIT1002_03642	0.34	+1.3
4,073,932	-		MIT1002_03642	0.35	-2.7
4,073,947	-		MIT1002_03642	0.35	-0.4
4,073,947	-		MIT1002_03642	0.35	-1.4
4,074,026	-		MIT1002_03642	0.38	+0.1
4,074,068	-		MIT1002_03642	0.39	-0.8
4,074,077	-		MIT1002_03642	0.39	-1.9
4,074,078	+		MIT1002_03642	0.39	-0.7
4,074,084	+		MIT1002_03642	0.39	+1.1
4,074,131	+		MIT1002_03642	0.41	-0.9
4,074,131	+		MIT1002_03642	0.41	-0.6
4,074,139	-		MIT1002_03642	0.41	+0.7
4,074,150	+		MIT1002_03642	0.41	-0.8
4,074,237	-		MIT1002_03642	0.44	-0.8
4,074,327	+		MIT1002_03642	0.47	-0.1
4,074,439	-		MIT1002_03642	0.50	+1.1
4,074,550	+		MIT1002_03642	0.53	+1.5
4,074,558	-		MIT1002_03642	0.54	+0.6
4,074,595	-		MIT1002_03642	0.55	-0.1
4,074,611	-		MIT1002_03642	0.55	-1.0
4,074,631	+		MIT1002_03642	0.56	+0.7
4,074,632	-		MIT1002_03642	0.56	+1.0
4,074,632	-		MIT1002_03642	0.56	-0.2
4,074,645	-		MIT1002_03642	0.56	-0.2
4,074,655	+		MIT1002_03642	0.57	-1.8
4,074,663	-		MIT1002_03642	0.57	+0.8
4,074,687	+		MIT1002_03642	0.58	-0.8
4,074,792	+		MIT1002_03642	0.61	+0.5
4,074,838	+		MIT1002_03642	0.62	-2.1
4,074,838	+		MIT1002_03642	0.62	-0.4
4,074,838	+		MIT1002_03642	0.62	+0.2
4,074,843	-		MIT1002_03642	0.62	+0.2
4,074,869	+		MIT1002_03642	0.63	+0.7
4,074,877	-		MIT1002_03642	0.63	+0.8
4,074,892	-		MIT1002_03642	0.64	-1.8
4,074,892	-		MIT1002_03642	0.64	+2.9
4,074,892	-		MIT1002_03642	0.64	+0.4
4,074,896	+		MIT1002_03642	0.64	-0.2
4,074,896	+		MIT1002_03642	0.64	+0.1
4,074,964	+		MIT1002_03642	0.66	+2.7
4,074,973	-		MIT1002_03642	0.66	-0.5
4,074,986	+		MIT1002_03642	0.67	-0.2
4,075,042	+		MIT1002_03642	0.68	-0.6
4,075,050	-		MIT1002_03642	0.68	+1.5
4,075,050	-		MIT1002_03642	0.68	+0.5
4,075,132	-		MIT1002_03642	0.71	-1.3
4,075,159	-		MIT1002_03642	0.72	+0.6
4,075,170	+		MIT1002_03642	0.72	-1.5
4,075,178	-		MIT1002_03642	0.72	+2.3
4,075,188	-		MIT1002_03642	0.73	+0.1
4,075,193	+		MIT1002_03642	0.73	+0.2
4,075,284	+		MIT1002_03642	0.75	+0.6
4,075,294	+		MIT1002_03642	0.76	+0.2
4,075,294	+		MIT1002_03642	0.76	-1.7
4,075,294	+		MIT1002_03642	0.76	+0.2
4,075,302	-		MIT1002_03642	0.76	-0.8
4,075,302	-		MIT1002_03642	0.76	+1.0
4,075,302	-		MIT1002_03642	0.76	+0.6
4,075,314	+		MIT1002_03642	0.76	+1.9
4,075,322	-		MIT1002_03642	0.77	+2.3
4,075,324	-		MIT1002_03642	0.77	+0.4
4,075,352	+		MIT1002_03642	0.77	-0.1
4,075,360	-		MIT1002_03642	0.78	-0.2
4,075,371	-		MIT1002_03642	0.78	-1.3
4,075,397	-		MIT1002_03642	0.79	-0.4
4,075,411	+		MIT1002_03642	0.79	+0.5
4,075,453	+		MIT1002_03642	0.81	+0.2
4,075,453	+		MIT1002_03642	0.81	-0.7
4,075,513	-		MIT1002_03642	0.82	+0.2
4,075,532	+		MIT1002_03642	0.83	-0.1
4,075,538	-		MIT1002_03642	0.83	+1.3
4,075,540	-		MIT1002_03642	0.83	+1.3
4,075,596	+		MIT1002_03642	0.85	+2.3
4,075,604	-		MIT1002_03642	0.85	+0.2
4,075,604	-		MIT1002_03642	0.85	-1.3
4,075,616	+		MIT1002_03642	0.85	-0.4
4,075,616	+		MIT1002_03642	0.85	-0.9
4,075,669	+		MIT1002_03642	0.87	+1.6
4,075,687	-		MIT1002_03642	0.88	-0.5
4,075,697	-		MIT1002_03642	0.88	+1.8
4,075,707	-		MIT1002_03642	0.88	+0.1
4,075,714	+		MIT1002_03642	0.88	-0.1
4,075,808	+				+0.5
4,075,907	-				+0.3
4,075,929	+				-0.1
4,075,941	+				+1.3
4,075,941	+				+1.7
4,075,941	+				+0.3
4,076,022	-				+0.4
4,076,116	+				-1.5
4,076,298	+				+0.4
4,076,317	-				+1.1
4,076,595	+		MIT1002_03643	0.47	-0.9
4,076,602	+		MIT1002_03643	0.48	+1.1
4,076,603	-		MIT1002_03643	0.48	+0.5
4,076,603	-		MIT1002_03643	0.48	+1.1
4,076,610	-		MIT1002_03643	0.49	-0.1
4,076,615	-		MIT1002_03643	0.50	+0.7
4,076,615	-		MIT1002_03643	0.50	-2.9
4,076,641	+		MIT1002_03643	0.55	-0.5
4,076,659	+		MIT1002_03643	0.58	+0.1
4,076,694	-		MIT1002_03643	0.65	+0.6
4,076,790	+		MIT1002_03643	0.82	+0.1
4,076,790	-		MIT1002_03643	0.82	-0.9
4,076,792	+		MIT1002_03643	0.83	-1.9
4,076,795	-		MIT1002_03643	0.83	+0.1
4,076,798	-		MIT1002_03643	0.84	+1.0
4,076,849	+				-1.3
4,076,865	-				+0.2
4,076,912	-				+0.1
4,076,922	+				+0.3
4,076,942	-				+0.1
4,076,956	-				+1.0
4,076,965	-				-1.3
4,076,981	+				-0.1
4,076,989	-				-1.4
4,077,000	+				+0.0
4,077,005	+				+0.6
4,077,005	+				-0.5
4,077,005	+				-0.4
4,077,005	+				-1.5
4,077,005	+				-0.4
4,077,005	+				+0.7
4,077,005	+				+1.7
4,077,013	-				-0.6
4,077,013	-				-0.3
4,077,013	-				-0.9
4,077,013	-				-0.1
4,077,015	+				+0.2
4,077,015	+				+0.4
4,077,042	+		MIT1002_03644	0.11	+0.8