Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03624

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,049,511	-		MIT1002_03622	0.60	-1.2
4,049,526	+		MIT1002_03622	0.62	+0.3
4,049,526	+		MIT1002_03622	0.62	+0.3
4,049,534	-		MIT1002_03622	0.62	+0.1
4,049,571	+		MIT1002_03622	0.66	-0.7
4,049,571	+		MIT1002_03622	0.66	+1.1
4,049,571	+		MIT1002_03622	0.66	-1.6
4,049,579	-		MIT1002_03622	0.67	-0.7
4,049,579	-		MIT1002_03622	0.67	-0.5
4,049,579	-		MIT1002_03622	0.67	+0.3
4,049,632	-		MIT1002_03622	0.72	-0.5
4,049,637	-		MIT1002_03622	0.73	-0.9
4,049,637	-		MIT1002_03622	0.73	+0.8
4,049,663	+		MIT1002_03622	0.75	+0.7
4,049,687	-		MIT1002_03622	0.78	-0.4
4,049,697	+		MIT1002_03622	0.79	+1.4
4,049,737	+		MIT1002_03622	0.83	-0.7
4,049,763	-		MIT1002_03622	0.85	-0.6
4,049,797	+		MIT1002_03622	0.88	+2.6
4,049,941	-				-1.7
4,050,003	-				+0.2
4,050,005	+				-1.0
4,050,005	+				+0.3
4,050,007	+				-1.4
4,050,012	+				+0.3
4,050,020	-				+0.1
4,050,153	+				-1.0
4,050,161	-				+0.5
4,050,182	-				+0.3
4,050,183	+				+1.3
4,050,189	+				-0.1
4,050,191	-				+0.2
4,050,191	-				-0.5
4,050,352	+		MIT1002_03623	0.28	+0.1
4,050,352	+		MIT1002_03623	0.28	-2.7
4,050,352	+		MIT1002_03623	0.28	+0.0
4,050,352	+		MIT1002_03623	0.28	+0.6
4,050,352	+		MIT1002_03623	0.28	-1.4
4,050,352	+		MIT1002_03623	0.28	-0.2
4,050,352	+		MIT1002_03623	0.28	-0.4
4,050,352	+		MIT1002_03623	0.28	-1.1
4,050,352	+		MIT1002_03623	0.28	+0.5
4,050,352	+		MIT1002_03623	0.28	-0.1
4,050,352	+		MIT1002_03623	0.28	-1.2
4,050,352	+		MIT1002_03623	0.28	-0.8
4,050,352	+		MIT1002_03623	0.28	-2.7
4,050,352	+		MIT1002_03623	0.28	+0.0
4,050,352	+		MIT1002_03623	0.28	-1.0
4,050,352	+		MIT1002_03623	0.28	-0.4
4,050,352	+		MIT1002_03623	0.28	-1.0
4,050,352	+		MIT1002_03623	0.28	-0.3
4,050,352	+		MIT1002_03623	0.28	-1.1
4,050,352	+		MIT1002_03623	0.28	-1.7
4,050,352	+		MIT1002_03623	0.28	+0.3
4,050,352	+		MIT1002_03623	0.28	+0.1
4,050,355	+		MIT1002_03623	0.30	-1.1
4,050,360	-		MIT1002_03623	0.33	+2.1
4,050,360	-		MIT1002_03623	0.33	+0.1
4,050,360	-		MIT1002_03623	0.33	-1.0
4,050,360	-		MIT1002_03623	0.33	+0.2
4,050,360	-		MIT1002_03623	0.33	-0.4
4,050,360	-		MIT1002_03623	0.33	-1.1
4,050,360	-		MIT1002_03623	0.33	-0.6
4,050,360	-		MIT1002_03623	0.33	+0.2
4,050,360	-		MIT1002_03623	0.33	-2.2
4,050,360	-		MIT1002_03623	0.33	-1.0
4,050,360	-		MIT1002_03623	0.33	+0.5
4,050,360	-		MIT1002_03623	0.33	+0.0
4,050,360	-		MIT1002_03623	0.33	-1.5
4,050,360	-		MIT1002_03623	0.33	-2.7
4,050,360	-		MIT1002_03623	0.33	-1.8
4,050,424	+		MIT1002_03623	0.72	-0.1
4,050,449	+		MIT1002_03623	0.87	-0.3
4,050,540	+				-0.8
4,050,548	-				-0.7
4,050,588	+				-0.5
4,050,648	-				-0.7
4,050,677	-		MIT1002_03624	0.11	-0.9
4,050,679	+		MIT1002_03624	0.11	-1.3
4,050,679	+		MIT1002_03624	0.11	+0.0
4,050,687	-		MIT1002_03624	0.11	-1.0
4,050,762	+		MIT1002_03624	0.16	+0.1
4,050,769	-		MIT1002_03624	0.17	+0.7
4,050,919	-		MIT1002_03624	0.26	-0.6
4,050,932	+		MIT1002_03624	0.27	-1.4
4,050,932	+		MIT1002_03624	0.27	-0.2
4,050,932	+		MIT1002_03624	0.27	+0.4
4,050,932	+		MIT1002_03624	0.27	+0.6
4,050,940	-		MIT1002_03624	0.27	-0.4
4,050,940	-		MIT1002_03624	0.27	+0.0
4,051,055	-		MIT1002_03624	0.35	+0.4
4,051,125	+		MIT1002_03624	0.39	-0.6
4,051,125	+		MIT1002_03624	0.39	-0.6
4,051,133	-		MIT1002_03624	0.39	+0.6
4,051,135	+		MIT1002_03624	0.40	-1.3
4,051,145	-		MIT1002_03624	0.40	-0.7
4,051,157	-		MIT1002_03624	0.41	+0.2
4,051,181	+		MIT1002_03624	0.42	-1.0
4,051,181	+		MIT1002_03624	0.42	-2.4
4,051,181	+		MIT1002_03624	0.42	+0.3
4,051,211	+		MIT1002_03624	0.44	-2.0
4,051,223	-		MIT1002_03624	0.45	-1.1
4,051,235	+		MIT1002_03624	0.46	+0.6
4,051,254	+		MIT1002_03624	0.47	+0.5
4,051,267	+		MIT1002_03624	0.48	+0.9
4,051,275	+		MIT1002_03624	0.48	-0.6
4,051,290	+		MIT1002_03624	0.49	+0.6
4,051,298	-		MIT1002_03624	0.50	+0.0
4,051,298	-		MIT1002_03624	0.50	+0.6
4,051,511	+		MIT1002_03624	0.63	+0.3
4,051,511	+		MIT1002_03624	0.63	+0.4
4,051,554	+		MIT1002_03624	0.66	+0.3
4,051,619	-		MIT1002_03624	0.70	-1.6
4,051,623	+		MIT1002_03624	0.70	-0.9
4,051,631	-		MIT1002_03624	0.71	+0.6
4,051,631	-		MIT1002_03624	0.71	-0.3
4,051,645	+		MIT1002_03624	0.71	-0.5
4,051,685	-		MIT1002_03624	0.74	-1.8
4,051,723	-		MIT1002_03624	0.76	-0.7
4,051,740	+		MIT1002_03624	0.77	-1.2
4,051,761	-		MIT1002_03624	0.79	+0.5
4,051,982	-				+0.2
4,051,984	-				+0.5
4,052,013	-				-0.2
4,052,125	+				+0.6
4,052,125	+				+0.4
4,052,125	+				-0.4
4,052,125	+				-0.9
4,052,125	+				+0.5
4,052,125	+				-0.3
4,052,133	-				-0.4
4,052,133	-				-0.7
4,052,133	-				+0.5
4,052,133	-				+0.4
4,052,133	-				+0.9
4,052,144	+				+1.1
4,052,152	-				-0.7
4,052,333	+				-0.7
4,052,362	+				-0.1
4,052,394	-		MIT1002_03625	0.10	-1.1
4,052,435	-		MIT1002_03625	0.19	-0.2
4,052,613	+		MIT1002_03625	0.55	+0.2
4,052,613	+		MIT1002_03625	0.55	-1.0
4,052,618	+		MIT1002_03625	0.57	-1.1
4,052,705	+		MIT1002_03625	0.75	+0.4
4,052,712	+		MIT1002_03625	0.76	-0.1
4,052,713	-		MIT1002_03625	0.76	-0.7
4,052,770	-		MIT1002_03625	0.88	+0.8
4,052,805	-				-0.5
4,052,842	-				+1.1
4,052,914	-				-0.1
4,052,915	+				-0.6
4,052,915	+				-0.2
4,053,027	-		MIT1002_03626	0.18	+0.8
4,053,096	+		MIT1002_03626	0.29	-0.3