Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03555

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
3,976,931	+		MIT1002_03554	0.41	-0.1
3,976,935	-		MIT1002_03554	0.41	-1.5
3,976,937	-		MIT1002_03554	0.41	-0.5
3,976,949	+		MIT1002_03554	0.43	-0.9
3,976,949	+		MIT1002_03554	0.43	+0.1
3,977,133	-		MIT1002_03554	0.71	+0.1
3,977,170	-		MIT1002_03554	0.76	-0.3
3,977,252	+		MIT1002_03554	0.88	+0.1
3,977,264	-				-0.6
3,977,303	+				+0.1
3,977,514	+				-0.2
3,977,514	+				-1.1
3,977,520	+				+0.3
3,977,528	-				-2.8
3,977,540	+				+0.2
3,977,540	+				+0.2
3,977,567	-				-0.2
3,977,621	-				+0.5
3,977,621	-				-2.1
3,977,625	+				-0.1
3,977,633	-				-0.7
3,977,647	-				+2.2
3,977,710	+				-0.3
3,977,853	+				+1.0
3,977,853	+				+1.1
3,977,861	-				+1.1
3,977,861	-				-1.0
3,977,878	+				+0.2
3,977,967	+				-0.2
3,977,987	+				-0.3
3,977,992	+				+1.3
3,977,997	+				+0.7
3,978,042	-				+0.6
3,978,056	+				-0.7
3,978,057	-				+1.1
3,978,064	-				-2.4
3,978,109	-		MIT1002_03555	0.12	+1.6
3,978,119	+		MIT1002_03555	0.12	-1.7
3,978,120	+		MIT1002_03555	0.12	-0.0
3,978,180	+		MIT1002_03555	0.15	-1.2
3,978,180	+		MIT1002_03555	0.15	+1.3
3,978,219	+		MIT1002_03555	0.16	-1.9
3,978,265	+		MIT1002_03555	0.18	-0.4
3,978,457	-		MIT1002_03555	0.27	+0.5
3,978,485	+		MIT1002_03555	0.28	-0.9
3,978,487	+		MIT1002_03555	0.28	+0.0
3,978,508	+		MIT1002_03555	0.29	-0.0
3,978,516	-		MIT1002_03555	0.29	-1.1
3,978,671	-		MIT1002_03555	0.36	-0.4
3,978,708	-		MIT1002_03555	0.37	-0.8
3,978,726	-		MIT1002_03555	0.38	-1.8
3,978,726	-		MIT1002_03555	0.38	-1.0
3,978,784	+		MIT1002_03555	0.41	+0.3
3,978,858	-		MIT1002_03555	0.44	+0.2
3,978,866	-		MIT1002_03555	0.44	-0.5
3,979,037	+		MIT1002_03555	0.51	+0.3
3,979,102	+		MIT1002_03555	0.54	-0.2
3,979,125	+		MIT1002_03555	0.55	-1.8
3,979,125	+		MIT1002_03555	0.55	-0.2
3,979,133	-		MIT1002_03555	0.55	-0.2
3,979,147	+		MIT1002_03555	0.56	-0.8
3,979,245	+		MIT1002_03555	0.60	+1.1
3,979,305	-		MIT1002_03555	0.63	-0.1
3,979,370	+		MIT1002_03555	0.65	-2.5
3,979,427	+		MIT1002_03555	0.68	+0.6
3,979,442	-		MIT1002_03555	0.68	-0.4
3,979,522	-		MIT1002_03555	0.72	-0.2
3,979,538	-		MIT1002_03555	0.73	+1.3
3,979,577	-		MIT1002_03555	0.74	-0.3
3,979,614	+		MIT1002_03555	0.76	-2.0
3,979,657	+		MIT1002_03555	0.78	+2.2
3,979,718	-		MIT1002_03555	0.80	+0.6
3,979,737	+		MIT1002_03555	0.81	-0.2
3,979,797	-		MIT1002_03555	0.84	-0.7
3,979,797	-		MIT1002_03555	0.84	-1.0
3,979,841	+		MIT1002_03555	0.85	+0.2
3,979,928	+		MIT1002_03555	0.89	+1.7
3,979,928	+		MIT1002_03555	0.89	-1.0
3,979,938	-		MIT1002_03555	0.90	-1.5
3,979,943	-		MIT1002_03555	0.90	+1.1
3,979,986	-				-1.7
3,979,987	-				+0.1
3,979,995	+				-0.9
3,980,044	+				+0.6
3,980,090	+				-0.3
3,980,124	+				+0.3
3,980,164	+				-0.0
3,980,236	-				+0.2
3,980,264	+				-0.3
3,980,354	-				-0.8
3,980,359	+				+0.5
3,980,367	-				-0.2
3,980,367	-				-0.1
3,980,395	-				-0.1
3,980,410	-				-2.2
3,980,547	-		MIT1002_03556	0.14	+0.3
3,980,883	-		MIT1002_03556	0.42	+0.7
3,981,091	-		MIT1002_03556	0.60	+0.3