Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03460

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
3,866,664	+				+2.0
3,866,687	-				-1.2
3,866,687	-				-0.5
3,866,708	-				+0.1
3,866,795	+				+0.5
3,866,880	-		MIT1002_03459	0.13	+0.5
3,866,889	-		MIT1002_03459	0.14	-2.7
3,866,986	-		MIT1002_03459	0.27	+0.0
3,867,148	+		MIT1002_03459	0.49	-0.8
3,867,168	-		MIT1002_03459	0.52	+0.3
3,867,288	+		MIT1002_03459	0.68	+0.4
3,867,296	-		MIT1002_03459	0.69	+0.2
3,867,369	-		MIT1002_03459	0.79	+0.3
3,867,380	+		MIT1002_03459	0.81	-1.0
3,867,380	+		MIT1002_03459	0.81	+0.8
3,867,380	+		MIT1002_03459	0.81	+0.8
3,867,432	-		MIT1002_03459	0.88	+0.3
3,867,456	-				+0.5
3,867,479	+				-0.1
3,867,571	+				-0.0
3,867,643	+				+0.3
3,867,690	-				-2.8
3,867,738	+				+0.4
3,867,749	+				+0.9
3,867,868	-		MIT1002_03460	0.15	+2.8
3,867,881	+		MIT1002_03460	0.15	+0.3
3,867,963	-		MIT1002_03460	0.21	-1.1
3,867,972	-		MIT1002_03460	0.21	+0.3
3,867,977	-		MIT1002_03460	0.22	-1.4
3,867,977	-		MIT1002_03460	0.22	-0.4
3,868,031	-		MIT1002_03460	0.25	+0.1
3,868,068	+		MIT1002_03460	0.28	+0.4
3,868,068	+		MIT1002_03460	0.28	+1.0
3,868,068	+		MIT1002_03460	0.28	-0.6
3,868,068	+		MIT1002_03460	0.28	+0.8
3,868,068	+		MIT1002_03460	0.28	-2.3
3,868,076	-		MIT1002_03460	0.28	+0.3
3,868,076	-		MIT1002_03460	0.28	+2.0
3,868,076	-		MIT1002_03460	0.28	-0.4
3,868,076	-		MIT1002_03460	0.28	+1.5
3,868,121	+		MIT1002_03460	0.31	-0.4
3,868,121	+		MIT1002_03460	0.31	+0.2
3,868,129	-		MIT1002_03460	0.32	+0.6
3,868,146	-		MIT1002_03460	0.33	-0.1
3,868,196	+		MIT1002_03460	0.36	+0.2
3,868,196	+		MIT1002_03460	0.36	+0.1
3,868,204	-		MIT1002_03460	0.37	-0.1
3,868,204	-		MIT1002_03460	0.37	+0.1
3,868,204	-		MIT1002_03460	0.37	+0.6
3,868,204	-		MIT1002_03460	0.37	+0.1
3,868,313	+		MIT1002_03460	0.44	+0.6
3,868,313	+		MIT1002_03460	0.44	+1.1
3,868,313	+		MIT1002_03460	0.44	+1.4
3,868,314	+		MIT1002_03460	0.44	+0.2
3,868,388	+		MIT1002_03460	0.49	-1.4
3,868,393	+		MIT1002_03460	0.49	+1.1
3,868,395	+		MIT1002_03460	0.50	+1.2
3,868,404	+		MIT1002_03460	0.50	+0.4
3,868,404	+		MIT1002_03460	0.50	+0.5
3,868,432	-		MIT1002_03460	0.52	+0.5
3,868,446	+		MIT1002_03460	0.53	+0.5
3,868,454	-		MIT1002_03460	0.53	-0.6
3,868,461	+		MIT1002_03460	0.54	+0.7
3,868,527	+		MIT1002_03460	0.58	-0.5
3,868,536	-		MIT1002_03460	0.59	+1.6
3,868,538	+		MIT1002_03460	0.59	-0.1
3,868,546	-		MIT1002_03460	0.60	+0.9
3,868,663	-		MIT1002_03460	0.67	+0.6
3,868,727	+		MIT1002_03460	0.72	-0.0
3,868,727	+		MIT1002_03460	0.72	+1.1
3,868,802	+		MIT1002_03460	0.77	-0.5
3,868,810	-		MIT1002_03460	0.77	-0.9
3,868,844	+		MIT1002_03460	0.79	+0.6
3,868,905	-		MIT1002_03460	0.83	+2.6
3,868,915	+		MIT1002_03460	0.84	+0.2
3,868,930	+		MIT1002_03460	0.85	-0.2
3,868,933	-		MIT1002_03460	0.85	+0.7
3,868,937	+		MIT1002_03460	0.86	+1.3
3,868,937	+		MIT1002_03460	0.86	+1.8
3,868,976	-		MIT1002_03460	0.88	-0.2
3,869,050	+				-0.1
3,869,154	+				+0.5
3,869,211	-				-0.7
3,869,267	+				-0.2
3,869,280	+				-1.1
3,869,287	+				-1.0
3,869,328	+				-0.3
3,869,425	-				-0.2
3,869,529	+				-0.6
3,869,529	+				-0.3
3,869,529	+				-0.2
3,869,537	-				+0.7
3,869,537	-				+1.8
3,869,653	+				-0.5
3,869,653	-				+0.1
3,869,671	-				-0.3
3,869,671	-				-0.1
3,869,764	-		MIT1002_03461	0.11	-0.5
3,869,766	+		MIT1002_03461	0.12	+0.3
3,869,821	+		MIT1002_03461	0.14	+1.1
3,869,829	-		MIT1002_03461	0.14	-0.8
3,869,829	-		MIT1002_03461	0.14	-0.2
3,869,829	-		MIT1002_03461	0.14	+0.0
3,869,917	+		MIT1002_03461	0.18	-0.5
3,869,917	+		MIT1002_03461	0.18	-2.0
3,869,917	+		MIT1002_03461	0.18	-0.4
3,869,925	-		MIT1002_03461	0.18	-0.7
3,869,925	-		MIT1002_03461	0.18	+0.6
3,869,925	-		MIT1002_03461	0.18	-0.2
3,869,937	+		MIT1002_03461	0.19	-0.6
3,869,937	-		MIT1002_03461	0.19	+0.8
3,869,945	-		MIT1002_03461	0.19	+0.0
3,870,081	+		MIT1002_03461	0.25	+1.0
3,870,097	-		MIT1002_03461	0.26	-3.1
3,870,134	+		MIT1002_03461	0.27	+0.6
3,870,144	+		MIT1002_03461	0.28	+0.5
3,870,152	-		MIT1002_03461	0.28	-2.6
3,870,152	-		MIT1002_03461	0.28	-1.5