Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03440

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
3,846,395	-		MIT1002_03439	0.56	+0.7
3,846,438	+		MIT1002_03439	0.58	+1.3
3,846,439	+		MIT1002_03439	0.58	-0.8
3,846,439	+		MIT1002_03439	0.58	-0.1
3,846,461	-		MIT1002_03439	0.59	+0.5
3,846,533	-		MIT1002_03439	0.62	+0.4
3,846,568	-		MIT1002_03439	0.63	+1.3
3,846,669	+		MIT1002_03439	0.68	-0.1
3,846,679	+		MIT1002_03439	0.68	-0.7
3,846,724	-		MIT1002_03439	0.70	+0.3
3,846,733	+		MIT1002_03439	0.71	+0.3
3,846,733	+		MIT1002_03439	0.71	-0.6
3,846,740	+		MIT1002_03439	0.71	+0.4
3,846,740	+		MIT1002_03439	0.71	-0.7
3,846,741	-		MIT1002_03439	0.71	+1.6
3,846,741	-		MIT1002_03439	0.71	+1.3
3,846,748	-		MIT1002_03439	0.72	+0.8
3,846,748	-		MIT1002_03439	0.72	+2.8
3,846,748	-		MIT1002_03439	0.72	-0.3
3,846,774	+		MIT1002_03439	0.73	-0.4
3,846,820	-		MIT1002_03439	0.75	-1.3
3,846,910	+		MIT1002_03439	0.79	-0.2
3,846,942	+		MIT1002_03439	0.80	+2.4
3,846,942	+		MIT1002_03439	0.80	+4.6
3,846,942	+		MIT1002_03439	0.80	-1.0
3,846,950	-		MIT1002_03439	0.81	-0.5
3,846,955	-		MIT1002_03439	0.81	+1.1
3,846,975	+		MIT1002_03439	0.82	+0.9
3,846,982	+		MIT1002_03439	0.82	+0.6
3,847,112	-		MIT1002_03439	0.88	+0.7
3,847,188	-				+0.4
3,847,225	-				+0.0
3,847,240	+				+1.5
3,847,305	+				+0.6
3,847,331	+				-0.2
3,847,346	+				-2.4
3,847,346	+				-0.7
3,847,346	+				+0.2
3,847,354	-				-0.2
3,847,354	-				+2.6
3,847,354	-				-0.1
3,847,356	+				+0.8
3,847,364	-				-2.0
3,847,375	+				+0.6
3,847,754	+		MIT1002_03440	0.69	-1.5
3,847,754	+		MIT1002_03440	0.69	+0.8
3,847,754	+		MIT1002_03440	0.69	-1.7
3,847,762	-		MIT1002_03440	0.71	-2.1
3,847,948	+				-0.2
3,847,954	-				-1.3
3,847,954	-				-1.7
3,847,954	-				-4.3
3,847,964	-				+0.8
3,848,092	+				+0.8
3,848,170	+				+0.6
3,848,170	+				+0.5
3,848,184	+				-1.3
3,848,222	+				-0.1
3,848,222	+				+0.4
3,848,230	-				-0.9
3,848,237	-				-0.7
3,848,315	-		MIT1002_03441	0.18	-0.2
3,848,383	-		MIT1002_03441	0.32	+0.3
3,848,548	+		MIT1002_03441	0.66	+0.1
3,848,556	-		MIT1002_03441	0.68	-1.3
3,848,558	-		MIT1002_03441	0.68	-0.7
3,848,886	+		MIT1002_03442	0.19	+0.1
3,848,886	+		MIT1002_03442	0.19	-0.5