Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03198

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03197 and MIT1002_03198 are separated by 212 nucleotidesMIT1002_03198 and MIT1002_03199 are separated by 0 nucleotides MIT1002_03197: MIT1002_03197 - Cytosol aminopeptidase, at 3,563,797 to 3,565,353 _03197 MIT1002_03198: MIT1002_03198 - Lipopolysaccharide export system permease protein LptF, at 3,565,566 to 3,566,666 _03198 MIT1002_03199: MIT1002_03199 - Lipopolysaccharide export system permease protein LptG, at 3,566,667 to 3,567,728 _03199 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -1 0 1at 3564.755 kb on - strand, within MIT1002_03197at 3564.755 kb on - strand, within MIT1002_03197at 3564.819 kb on - strand, within MIT1002_03197at 3565.377 kb on - strandat 3565.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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3,564,755 - MIT1002_03197 0.62 +0.6
3,564,755 - MIT1002_03197 0.62 -0.9
3,564,819 - MIT1002_03197 0.66 -0.8
3,565,377 - +1.3
3,565,377 - +0.1

Or see this region's nucleotide sequence