Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03135

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
3,490,433	-		MIT1002_03134	0.44	+0.4
3,490,440	-		MIT1002_03134	0.44	+0.2
3,490,475	+		MIT1002_03134	0.46	-0.7
3,490,483	-		MIT1002_03134	0.47	-0.4
3,490,550	-		MIT1002_03134	0.51	+0.5
3,490,556	+		MIT1002_03134	0.52	-0.7
3,490,573	+		MIT1002_03134	0.53	+0.5
3,490,586	+		MIT1002_03134	0.53	+1.3
3,490,594	+		MIT1002_03134	0.54	-0.3
3,490,611	-		MIT1002_03134	0.55	-0.8
3,490,646	-		MIT1002_03134	0.57	-0.6
3,490,667	+		MIT1002_03134	0.59	-0.5
3,490,675	-		MIT1002_03134	0.59	-0.7
3,490,771	+		MIT1002_03134	0.65	-0.2
3,490,771	+		MIT1002_03134	0.65	+0.3
3,490,779	-		MIT1002_03134	0.66	-0.2
3,490,812	+		MIT1002_03134	0.68	+1.3
3,490,820	-		MIT1002_03134	0.68	+0.4
3,490,820	-		MIT1002_03134	0.68	+0.7
3,490,865	+		MIT1002_03134	0.71	-0.8
3,490,868	-		MIT1002_03134	0.71	-0.3
3,490,892	+		MIT1002_03134	0.73	-0.6
3,490,892	+		MIT1002_03134	0.73	-0.3
3,490,900	-		MIT1002_03134	0.73	+0.2
3,490,911	+		MIT1002_03134	0.74	+2.7
3,490,932	-		MIT1002_03134	0.75	-1.6
3,490,942	-		MIT1002_03134	0.76	-0.9
3,491,001	+		MIT1002_03134	0.80	-0.4
3,491,038	-		MIT1002_03134	0.82	-1.4
3,491,045	+		MIT1002_03134	0.83	+0.2
3,491,090	-		MIT1002_03134	0.85	-1.2
3,491,111	+		MIT1002_03134	0.87	+0.1
3,491,193	-				+1.4
3,491,253	+				-1.3
3,491,261	-				+0.4
3,491,261	-				+2.9
3,491,422	-				-0.4
3,491,425	+				-0.4
3,491,425	+				-0.5
3,491,433	-				+1.2
3,491,433	-				-0.6
3,491,433	-				+0.1
3,491,433	-				-0.8
3,491,434	-				+0.0
3,491,439	+				+0.6
3,491,518	+				-1.2
3,491,523	+				-0.1
3,491,596	+		MIT1002_03135	0.10	+0.2
3,491,604	-		MIT1002_03135	0.11	+0.0
3,491,614	-		MIT1002_03135	0.11	-0.9
3,491,664	+		MIT1002_03135	0.14	-1.2
3,491,664	+		MIT1002_03135	0.14	-1.1
3,491,664	+		MIT1002_03135	0.14	+0.6
3,491,672	-		MIT1002_03135	0.15	+0.6
3,491,672	-		MIT1002_03135	0.15	-0.6
3,491,690	+		MIT1002_03135	0.16	-1.2
3,491,695	+		MIT1002_03135	0.16	+1.9
3,491,698	-		MIT1002_03135	0.16	-2.4
3,491,698	-		MIT1002_03135	0.16	+0.5
3,491,748	+		MIT1002_03135	0.19	-1.1
3,491,757	+		MIT1002_03135	0.20	-0.1
3,491,799	+		MIT1002_03135	0.22	+1.2
3,491,807	-		MIT1002_03135	0.23	+1.4
3,491,867	+		MIT1002_03135	0.26	-1.9
3,491,871	-		MIT1002_03135	0.26	+1.0
3,491,875	-		MIT1002_03135	0.27	+1.8
3,491,905	+		MIT1002_03135	0.28	+1.1
3,491,912	-		MIT1002_03135	0.29	+1.2
3,491,985	-		MIT1002_03135	0.33	+0.4
3,492,116	+		MIT1002_03135	0.41	-1.0
3,492,151	+		MIT1002_03135	0.43	-0.3
3,492,169	+		MIT1002_03135	0.44	-1.1
3,492,177	-		MIT1002_03135	0.44	-1.6
3,492,177	-		MIT1002_03135	0.44	-1.7
3,492,280	-		MIT1002_03135	0.50	-0.4
3,492,281	-		MIT1002_03135	0.50	+0.0
3,492,281	-		MIT1002_03135	0.50	+0.6
3,492,317	+		MIT1002_03135	0.52	+0.4
3,492,347	+		MIT1002_03135	0.54	+0.2
3,492,400	-		MIT1002_03135	0.57	-1.6
3,492,408	+		MIT1002_03135	0.58	-0.7
3,492,458	+		MIT1002_03135	0.61	+0.6
3,492,466	-		MIT1002_03135	0.61	-1.2
3,492,481	-		MIT1002_03135	0.62	+0.8
3,492,483	-		MIT1002_03135	0.62	-1.3
3,492,516	+		MIT1002_03135	0.64	+0.7
3,492,633	+		MIT1002_03135	0.71	-2.8
3,492,639	-		MIT1002_03135	0.71	-2.5
3,492,641	+		MIT1002_03135	0.71	+0.5
3,492,649	-		MIT1002_03135	0.72	-0.5
3,492,716	+		MIT1002_03135	0.76	-0.1
3,492,724	-		MIT1002_03135	0.76	-1.1
3,492,803	-		MIT1002_03135	0.81	+0.4
3,492,816	+		MIT1002_03135	0.82	-0.2
3,492,820	-		MIT1002_03135	0.82	-1.4
3,492,851	-		MIT1002_03135	0.84	+0.9
3,492,851	-		MIT1002_03135	0.84	-0.4
3,492,885	-		MIT1002_03135	0.86	+1.2
3,492,897	+		MIT1002_03135	0.86	+0.7
3,492,905	-		MIT1002_03135	0.87	+0.8
3,492,918	+		MIT1002_03135	0.88	+0.4
3,493,188	+		MIT1002_03136	0.11	+0.0
3,493,238	+		MIT1002_03136	0.20	-0.8
3,493,246	-		MIT1002_03136	0.21	+0.2
3,493,271	-		MIT1002_03136	0.26	-0.3
3,493,276	-		MIT1002_03136	0.27	+0.6
3,493,276	-		MIT1002_03136	0.27	-0.7
3,493,409	+		MIT1002_03136	0.51	-0.0
3,493,417	+		MIT1002_03136	0.52	-0.6
3,493,417	-		MIT1002_03136	0.52	+1.8
3,493,531	+		MIT1002_03136	0.73	-1.4
3,493,546	+		MIT1002_03136	0.75	+0.3
3,493,612	-		MIT1002_03136	0.87	-2.3
3,493,637	-				+1.0
3,493,637	-				-1.6
3,493,692	+				+2.1
3,493,700	-				+0.1
3,493,717	-				-0.2
3,493,740	+				+1.3
3,493,855	-				-0.8
3,493,872	-				+0.6
3,493,901	+				-1.3
3,493,945	+				+0.5
3,493,955	+				+0.2
3,494,012	+				-1.1
3,494,015	-				-0.1
3,494,024	+				-2.2
3,494,032	-				+1.1
3,494,057	-				-0.2
3,494,105	-				-1.6