Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03049

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
3,399,819	+		MIT1002_03048	0.48	-1.0
3,399,827	-		MIT1002_03048	0.49	-1.8
3,399,827	-		MIT1002_03048	0.49	+0.9
3,399,829	+		MIT1002_03048	0.49	+0.4
3,399,829	+		MIT1002_03048	0.49	-0.0
3,399,837	-		MIT1002_03048	0.49	+1.1
3,399,849	+		MIT1002_03048	0.50	+0.3
3,399,849	+		MIT1002_03048	0.50	+0.9
3,399,938	-		MIT1002_03048	0.57	+0.1
3,399,954	-		MIT1002_03048	0.58	-0.7
3,399,979	-		MIT1002_03048	0.60	-0.4
3,400,070	-		MIT1002_03048	0.66	-0.5
3,400,070	-		MIT1002_03048	0.66	-0.5
3,400,099	+		MIT1002_03048	0.69	+0.2
3,400,107	-		MIT1002_03048	0.69	-1.7
3,400,109	+		MIT1002_03048	0.69	-1.5
3,400,158	-		MIT1002_03048	0.73	-1.2
3,400,158	-		MIT1002_03048	0.73	-0.7
3,400,158	-		MIT1002_03048	0.73	+0.9
3,400,160	+		MIT1002_03048	0.73	-0.1
3,400,160	+		MIT1002_03048	0.73	-0.4
3,400,168	-		MIT1002_03048	0.74	+1.0
3,400,329	+		MIT1002_03048	0.85	-0.5
3,400,336	+		MIT1002_03048	0.86	-1.8
3,400,373	+		MIT1002_03048	0.89	-0.1
3,400,407	+				+2.1
3,400,487	-				-0.3
3,400,496	-				-0.3
3,400,567	-				+0.1
3,400,600	+				-0.5
3,400,622	+				+1.5
3,400,622	+				+1.1
3,400,630	-				-0.3
3,400,658	-				-0.1
3,400,706	+				-0.6
3,400,723	+				+0.0
3,400,779	+				+1.2
3,400,799	-				-0.6
3,400,881	-		MIT1002_03049	0.13	+1.2
3,400,926	-		MIT1002_03049	0.16	+1.0
3,400,926	-		MIT1002_03049	0.16	-0.0
3,400,966	-		MIT1002_03049	0.18	-0.1
3,400,974	-		MIT1002_03049	0.18	-0.7
3,400,982	+		MIT1002_03049	0.18	+1.5
3,401,008	+		MIT1002_03049	0.20	-0.6
3,401,016	-		MIT1002_03049	0.20	-0.1
3,401,059	-		MIT1002_03049	0.22	-0.0
3,401,079	-		MIT1002_03049	0.23	-0.5
3,401,111	+		MIT1002_03049	0.25	+0.5
3,401,170	-		MIT1002_03049	0.27	-0.3
3,401,177	+		MIT1002_03049	0.28	-2.1
3,401,185	-		MIT1002_03049	0.28	-0.8
3,401,294	+		MIT1002_03049	0.33	+0.9
3,401,302	-		MIT1002_03049	0.34	-0.1
3,401,315	-		MIT1002_03049	0.34	-0.3
3,401,332	-		MIT1002_03049	0.35	-0.3
3,401,379	+		MIT1002_03049	0.37	-1.8
3,401,409	-		MIT1002_03049	0.39	+0.8
3,401,469	+		MIT1002_03049	0.42	+0.7
3,401,484	+		MIT1002_03049	0.43	+0.6
3,401,499	-		MIT1002_03049	0.43	+0.1
3,401,561	+		MIT1002_03049	0.46	-1.0
3,401,563	+		MIT1002_03049	0.46	-0.7
3,401,569	-		MIT1002_03049	0.47	-1.1
3,401,571	-		MIT1002_03049	0.47	-0.4
3,401,575	+		MIT1002_03049	0.47	+0.5
3,401,580	+		MIT1002_03049	0.47	+0.1
3,401,628	+		MIT1002_03049	0.49	-0.5
3,401,644	+		MIT1002_03049	0.50	+0.1
3,401,647	-		MIT1002_03049	0.50	+0.6
3,401,651	-		MIT1002_03049	0.51	+0.6
3,401,677	+		MIT1002_03049	0.52	-0.2
3,401,680	-		MIT1002_03049	0.52	-3.9
3,401,685	-		MIT1002_03049	0.52	+0.3
3,401,685	-		MIT1002_03049	0.52	-2.4
3,401,710	+		MIT1002_03049	0.53	+0.1
3,401,710	+		MIT1002_03049	0.53	-0.5
3,401,718	-		MIT1002_03049	0.54	-0.2
3,401,734	+		MIT1002_03049	0.55	+0.1
3,401,762	-		MIT1002_03049	0.56	+1.5
3,401,762	-		MIT1002_03049	0.56	-0.4
3,401,768	+		MIT1002_03049	0.56	-0.3
3,401,776	-		MIT1002_03049	0.57	+0.0
3,401,776	-		MIT1002_03049	0.57	-0.5
3,401,778	-		MIT1002_03049	0.57	+0.1
3,401,780	+		MIT1002_03049	0.57	+0.8
3,401,940	+		MIT1002_03049	0.65	-1.6
3,402,011	+		MIT1002_03049	0.68	-1.3
3,402,019	-		MIT1002_03049	0.68	-0.3
3,402,019	-		MIT1002_03049	0.68	+1.1
3,402,021	+		MIT1002_03049	0.68	-1.0
3,402,021	+		MIT1002_03049	0.68	-0.1
3,402,021	+		MIT1002_03049	0.68	+0.5
3,402,021	+		MIT1002_03049	0.68	-0.8
3,402,021	+		MIT1002_03049	0.68	-1.6
3,402,029	-		MIT1002_03049	0.69	+0.4
3,402,029	-		MIT1002_03049	0.69	+0.0
3,402,029	-		MIT1002_03049	0.69	-0.3
3,402,089	+		MIT1002_03049	0.72	-1.4
3,402,160	+		MIT1002_03049	0.75	-0.5
3,402,160	-		MIT1002_03049	0.75	+0.6
3,402,244	+		MIT1002_03049	0.79	+0.8
3,402,245	-		MIT1002_03049	0.79	-2.4
3,402,284	+		MIT1002_03049	0.81	+0.6
3,402,286	+		MIT1002_03049	0.81	-1.2
3,402,305	+		MIT1002_03049	0.82	-1.7
3,402,305	+		MIT1002_03049	0.82	+0.1
3,402,429	+		MIT1002_03049	0.88	+0.6
3,402,434	+		MIT1002_03049	0.88	+0.4
3,402,434	+		MIT1002_03049	0.88	-0.4
3,402,434	+		MIT1002_03049	0.88	+0.1
3,402,434	+		MIT1002_03049	0.88	+1.1
3,402,434	+		MIT1002_03049	0.88	+0.3
3,402,434	+		MIT1002_03049	0.88	+1.5
3,402,434	+		MIT1002_03049	0.88	-0.5
3,402,442	-		MIT1002_03049	0.89	+0.1
3,402,442	-		MIT1002_03049	0.89	+0.5
3,402,442	-		MIT1002_03049	0.89	-0.6
3,402,470	+				+0.4
3,402,479	+				-0.0
3,402,479	+				-0.8
3,402,487	-				-1.0
3,402,487	-				+0.5
3,402,487	-				-0.8
3,402,487	-				-0.3
3,402,501	+				+0.9
3,402,511	+				-0.0
3,402,528	+				+0.5
3,402,528	+				-1.3
3,402,536	-				-0.7
3,402,543	-				-1.4
3,402,599	+				+0.5
3,402,615	-				+2.2
3,402,634	-				-0.9
3,402,645	+				-0.2
3,402,645	+				+0.5
3,402,645	+				-0.3
3,402,645	+				+0.5
3,402,653	-				+0.3
3,402,659	-				-0.0
3,402,718	-				-0.4
3,402,804	-				+0.1
3,402,826	-				+0.3
3,402,835	+				+0.6
3,402,841	-				-0.0
3,402,846	-				-1.0
3,402,996	-		MIT1002_03050	0.16	-2.1
3,403,004	+		MIT1002_03050	0.16	+0.0
3,403,094	+		MIT1002_03050	0.24	-1.3
3,403,275	+		MIT1002_03050	0.40	-0.7
3,403,280	+		MIT1002_03050	0.41	+0.2
3,403,363	-		MIT1002_03050	0.48	-0.1
3,403,390	+		MIT1002_03050	0.51	+0.6
3,403,395	+		MIT1002_03050	0.51	+0.9
3,403,481	-		MIT1002_03050	0.59	+0.2
3,403,571	+		MIT1002_03050	0.67	+0.0
3,403,579	-		MIT1002_03050	0.67	-0.8