Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02564

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,860,655	+		MIT1002_02562	0.39	+1.3
2,860,711	+		MIT1002_02562	0.47	-0.4
2,860,719	-		MIT1002_02562	0.48	+0.2
2,860,783	-		MIT1002_02562	0.57	+0.8
2,860,783	-		MIT1002_02562	0.57	+1.3
2,860,868	+		MIT1002_02562	0.69	-1.5
2,860,923	-		MIT1002_02562	0.77	+0.2
2,860,985	+		MIT1002_02562	0.86	-1.3
2,860,985	+		MIT1002_02562	0.86	+2.0
2,860,991	-		MIT1002_02562	0.87	-0.6
2,860,993	-		MIT1002_02562	0.87	-0.1
2,861,044	+				+0.3
2,861,052	-				+0.6
2,861,061	+				-0.0
2,861,087	-				+0.6
2,861,095	-				-1.8
2,861,113	+				+0.2
2,861,113	+				-0.6
2,861,113	+				-0.2
2,861,121	-				-2.8
2,861,155	-				-1.4
2,861,157	+				-1.2
2,861,165	-				+0.7
2,861,165	-				-0.0
2,861,185	+				+0.3
2,861,192	-				+0.0
2,861,200	-		MIT1002_02563	0.11	+1.3
2,861,239	+		MIT1002_02563	0.20	-0.5
2,861,274	+		MIT1002_02563	0.28	+0.2
2,861,282	-		MIT1002_02563	0.29	-1.2
2,861,287	-		MIT1002_02563	0.30	-0.1
2,861,297	-		MIT1002_02563	0.33	+0.0
2,861,374	+		MIT1002_02563	0.50	+0.2
2,861,376	+		MIT1002_02563	0.50	-0.5
2,861,385	+		MIT1002_02563	0.52	+0.4
2,861,415	+		MIT1002_02563	0.59	-0.1
2,861,423	-		MIT1002_02563	0.61	-0.5
2,861,517	+		MIT1002_02563	0.82	-1.4
2,861,520	-		MIT1002_02563	0.82	+0.6
2,861,532	-		MIT1002_02563	0.85	-1.0
2,861,630	+				+0.2
2,861,636	-				+1.2
2,861,672	+				+0.1
2,861,672	+				-1.3
2,861,712	-				-0.5
2,861,714	+				+1.1
2,861,714	+				-0.3
2,861,769	-		MIT1002_02564	0.14	-0.2
2,861,837	-		MIT1002_02564	0.19	+0.0
2,861,885	+		MIT1002_02564	0.23	-0.3
2,861,929	+		MIT1002_02564	0.27	+0.6
2,862,023	+		MIT1002_02564	0.35	+0.0
2,862,026	-		MIT1002_02564	0.35	-1.4
2,862,031	-		MIT1002_02564	0.35	+0.3
2,862,032	-		MIT1002_02564	0.35	-0.2
2,862,152	-		MIT1002_02564	0.45	+0.2
2,862,238	+		MIT1002_02564	0.52	+0.1
2,862,248	-		MIT1002_02564	0.53	-0.2
2,862,264	+		MIT1002_02564	0.54	+0.6
2,862,272	-		MIT1002_02564	0.55	+0.0
2,862,272	-		MIT1002_02564	0.55	-1.4
2,862,384	+		MIT1002_02564	0.64	+0.8
2,862,413	-		MIT1002_02564	0.66	-1.0
2,862,440	-		MIT1002_02564	0.68	+0.3
2,862,457	+		MIT1002_02564	0.70	-0.0
2,862,465	-		MIT1002_02564	0.70	+0.6
2,862,465	-		MIT1002_02564	0.70	+1.4
2,862,493	-		MIT1002_02564	0.73	+0.2
2,862,626	-		MIT1002_02564	0.83	-0.7
2,862,626	-		MIT1002_02564	0.83	-0.8
2,862,698	-		MIT1002_02564	0.89	+1.3
2,862,764	+				-0.7
2,862,797	+				-0.8
2,862,818	-				+1.2
2,862,826	+				+0.2
2,862,826	+				-0.8
2,862,840	+				-0.2
2,862,847	+				+0.5
2,862,848	-				+0.0
2,862,855	-				+0.2
2,862,862	-				-1.8
2,863,064	-		MIT1002_02565	0.47	-0.8
2,863,083	+		MIT1002_02565	0.52	-1.6
2,863,091	-		MIT1002_02565	0.54	-0.4
2,863,094	+		MIT1002_02565	0.55	-0.8
2,863,140	-		MIT1002_02565	0.68	+0.2
2,863,171	-		MIT1002_02565	0.77	+1.6
2,863,239	-				-1.5
2,863,243	+				-0.7
2,863,251	-				-0.6
2,863,287	+				+1.4
2,863,288	+				-0.3
2,863,295	-				-2.8
2,863,295	-				+1.2
2,863,296	-				-0.5
2,863,296	-				+0.2
2,863,314	-				+1.1
2,863,322	+				+1.2
2,863,369	+				+1.7
2,863,500	-				-1.1
2,863,500	-				-0.1
2,863,562	+				-1.3
2,863,588	+				-0.0
2,863,596	-				-1.5
2,863,643	+		MIT1002_02566	0.12	+0.0
2,863,656	+		MIT1002_02566	0.13	+0.6
2,863,665	+		MIT1002_02566	0.13	+1.6
2,863,668	+		MIT1002_02566	0.13	+0.2
2,863,687	+		MIT1002_02566	0.14	-0.2
2,863,687	+		MIT1002_02566	0.14	+0.4
2,863,687	+		MIT1002_02566	0.14	+0.7
2,863,695	-		MIT1002_02566	0.15	-0.4
2,863,695	-		MIT1002_02566	0.15	-0.9
2,863,695	-		MIT1002_02566	0.15	+0.9
2,863,756	-		MIT1002_02566	0.18	+0.6
2,863,756	-		MIT1002_02566	0.18	-3.1
2,863,788	+		MIT1002_02566	0.19	+0.4
2,863,803	-		MIT1002_02566	0.20	-0.1