Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02405

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,684,968	-				-1.2
2,685,003	+				-0.1
2,685,290	-		MIT1002_02404	0.38	-0.2
2,685,290	-		MIT1002_02404	0.38	-2.9
2,685,345	+		MIT1002_02404	0.43	-1.5
2,685,345	+		MIT1002_02404	0.43	-0.1
2,685,345	+		MIT1002_02404	0.43	-2.4
2,685,353	-		MIT1002_02404	0.44	-0.2
2,685,353	-		MIT1002_02404	0.44	-2.1
2,685,353	-		MIT1002_02404	0.44	-3.3
2,685,429	-		MIT1002_02404	0.52	-0.5
2,685,445	+		MIT1002_02404	0.54	-2.0
2,685,453	-		MIT1002_02404	0.55	-1.4
2,685,464	+		MIT1002_02404	0.56	-1.9
2,685,525	+		MIT1002_02404	0.62	-2.5
2,685,533	-		MIT1002_02404	0.63	-2.8
2,685,624	-		MIT1002_02404	0.73	-3.3
2,685,697	-		MIT1002_02404	0.80	-1.7
2,685,717	-		MIT1002_02404	0.82	-3.4
2,685,767	+		MIT1002_02404	0.88	-1.6
2,685,855	+				-2.6
2,685,863	-				-4.0
2,685,890	-				+0.4
2,685,896	-				-0.3
2,685,908	-				+0.8
2,685,908	-				+0.1
2,685,933	-				-1.6
2,685,933	-				-0.9
2,685,933	-				-0.3
2,685,935	+				-0.3
2,685,943	-				-1.8
2,685,943	-				-0.1
2,686,048	+				+0.9
2,686,054	+				-0.3
2,686,209	-		MIT1002_02405	0.18	+0.1
2,686,403	-		MIT1002_02405	0.28	+0.5
2,686,410	-		MIT1002_02405	0.29	-0.3
2,686,610	+		MIT1002_02405	0.40	-1.4
2,686,733	-		MIT1002_02405	0.46	-0.7
2,686,733	-		MIT1002_02405	0.46	-2.2
2,686,733	-		MIT1002_02405	0.46	-2.8
2,686,733	-		MIT1002_02405	0.46	-0.5
2,686,771	-		MIT1002_02405	0.49	-1.2
2,686,834	+		MIT1002_02405	0.52	-0.5
2,686,842	-		MIT1002_02405	0.52	+0.5
2,686,908	-		MIT1002_02405	0.56	-0.9
2,686,925	-		MIT1002_02405	0.57	+0.3
2,686,999	-		MIT1002_02405	0.61	+0.5
2,687,114	-		MIT1002_02405	0.67	+0.3
2,687,167	+		MIT1002_02405	0.70	-0.3
2,687,205	+		MIT1002_02405	0.72	-0.3
2,687,215	-		MIT1002_02405	0.73	-1.4
2,687,314	-		MIT1002_02405	0.78	-0.3
2,687,336	+		MIT1002_02405	0.79	-0.5
2,687,362	+		MIT1002_02405	0.81	-0.3
2,687,370	-		MIT1002_02405	0.81	+0.3
2,687,370	-		MIT1002_02405	0.81	-0.7
2,687,404	+		MIT1002_02405	0.83	-1.3
2,687,407	-		MIT1002_02405	0.83	-1.1
2,687,412	-		MIT1002_02405	0.84	-1.7
2,687,422	-		MIT1002_02405	0.84	+0.3
2,687,456	-		MIT1002_02405	0.86	-1.9
2,687,568	-				+0.3
2,687,568	-				-0.3
2,687,585	-				-1.2
2,687,625	-				-1.5
2,687,732	+				-1.3
2,687,740	-				-2.3
2,687,907	+		MIT1002_02406	0.27	-0.7
2,687,942	+		MIT1002_02406	0.32	-1.3
2,687,945	+		MIT1002_02406	0.32	-1.9
2,687,947	+		MIT1002_02406	0.33	-0.7
2,687,950	-		MIT1002_02406	0.33	+0.3
2,687,968	+		MIT1002_02406	0.36	-1.3
2,688,190	+		MIT1002_02406	0.68	-0.1
2,688,205	+		MIT1002_02406	0.70	-0.7
2,688,470	+				-0.3
2,688,478	-				+0.1
2,688,480	-				-1.0
2,688,488	+				-0.1
2,688,565	+		MIT1002_02407	0.10	+0.8