Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02386

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,661,515	-				-1.2
2,661,534	+				+0.9
2,661,567	-				+0.1
2,661,576	-				-0.6
2,661,600	+				-1.3
2,661,698	-		MIT1002_02385	0.23	-0.7
2,661,730	-		MIT1002_02385	0.28	+0.2
2,661,777	+		MIT1002_02385	0.35	+1.5
2,661,818	-		MIT1002_02385	0.41	-1.6
2,661,865	+		MIT1002_02385	0.49	-1.7
2,661,875	+		MIT1002_02385	0.50	-1.3
2,661,875	+		MIT1002_02385	0.50	-0.7
2,661,940	-		MIT1002_02385	0.60	-0.5
2,661,976	-		MIT1002_02385	0.66	+0.4
2,661,977	-		MIT1002_02385	0.66	+0.3
2,661,989	+		MIT1002_02385	0.68	-1.4
2,662,036	-		MIT1002_02385	0.75	+0.0
2,662,047	+		MIT1002_02385	0.77	-0.0
2,662,079	+		MIT1002_02385	0.82	-1.2
2,662,087	-		MIT1002_02385	0.83	+0.4
2,662,122	+		MIT1002_02385	0.88	+0.8
2,662,166	-				-0.6
2,662,181	-				-1.0
2,662,203	-				+1.3
2,662,207	+				-0.9
2,662,208	-				-0.7
2,662,254	-				-0.7
2,662,262	+				+1.5
2,662,305	+				+1.3
2,662,319	+				+1.6
2,662,319	+				+1.0
2,662,494	+				-0.7
2,662,598	-		MIT1002_02386	0.50	-2.0
2,662,778	-		MIT1002_02387	0.31	-0.6
2,662,778	-		MIT1002_02387	0.31	+1.1
2,662,778	-		MIT1002_02387	0.31	+0.2
2,662,780	-		MIT1002_02387	0.32	-1.0
2,662,824	-		MIT1002_02387	0.55	-0.5
2,662,897	+				-1.6
2,662,931	+				+0.6
2,662,966	+				-1.1
2,663,019	-		MIT1002_02388	0.11	+0.9
2,663,037	-		MIT1002_02388	0.19	-1.5
2,663,039	-		MIT1002_02388	0.20	+0.5
2,663,063	+		MIT1002_02388	0.31	+0.4
2,663,063	+		MIT1002_02388	0.31	+1.5
2,663,063	+		MIT1002_02388	0.31	+0.1
2,663,071	-		MIT1002_02388	0.35	+0.0
2,663,071	-		MIT1002_02388	0.35	+0.5
2,663,089	-		MIT1002_02388	0.43	-0.2
2,663,120	+		MIT1002_02388	0.57	-0.4
2,663,144	+		MIT1002_02388	0.68	+0.3
2,663,152	-		MIT1002_02388	0.72	-1.6
2,663,195	+				-2.1
2,663,203	-				+0.6
2,663,283	+				-1.8
2,663,370	-				-0.8
2,663,384	+				-0.3
2,663,385	-				-0.4
2,663,389	+				+0.1
2,663,472	+				-0.2
2,663,575	-		MIT1002_02389	0.12	-0.1
2,663,580	-		MIT1002_02389	0.12	+0.2