Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02264

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,518,777	-				+0.3
2,518,971	-				+0.3
2,518,988	+				+0.7
2,519,026	+				-0.5
2,519,056	+		MIT1002_02263	0.15	-0.9
2,519,056	+		MIT1002_02263	0.15	-1.1
2,519,073	+		MIT1002_02263	0.18	-1.4
2,519,081	-		MIT1002_02263	0.19	-0.2
2,519,081	-		MIT1002_02263	0.19	+0.7
2,519,081	-		MIT1002_02263	0.19	+0.3
2,519,139	+		MIT1002_02263	0.30	+0.3
2,519,193	+		MIT1002_02263	0.39	+1.0
2,519,282	+		MIT1002_02263	0.55	-0.2
2,519,282	+		MIT1002_02263	0.55	+0.3
2,519,282	+		MIT1002_02263	0.55	+0.3
2,519,317	-		MIT1002_02263	0.62	+0.4
2,519,433	-		MIT1002_02263	0.83	-0.7
2,519,433	-		MIT1002_02263	0.83	+0.5
2,519,462	-		MIT1002_02263	0.88	+0.3
2,519,490	-				-0.3
2,519,502	+				+0.9
2,519,502	+				+0.4
2,519,510	-				-0.9
2,519,510	-				+0.5
2,519,514	+				+0.4
2,519,539	+				+0.5
2,519,547	-				-0.1
2,519,549	+				-1.1
2,519,557	-				+1.9
2,519,557	-				-0.0
2,519,557	-				+1.4
2,519,561	+				+0.3
2,519,597	-				+0.3
2,519,651	-				+0.1
2,519,698	+				+0.8
2,519,706	-				+0.6
2,519,859	+		MIT1002_02264	0.26	+0.0
2,519,859	+		MIT1002_02264	0.26	-0.6
2,519,859	+		MIT1002_02264	0.26	+0.0
2,519,867	-		MIT1002_02264	0.28	-0.3
2,519,874	-		MIT1002_02264	0.29	-0.0
2,519,930	+		MIT1002_02264	0.38	+1.7
2,519,965	+		MIT1002_02264	0.44	+0.9
2,520,164	+		MIT1002_02264	0.77	+1.6
2,520,164	+		MIT1002_02264	0.77	-0.7
2,520,172	-		MIT1002_02264	0.78	-0.6
2,520,172	-		MIT1002_02264	0.78	+0.3
2,520,172	-		MIT1002_02264	0.78	-1.3
2,520,172	-		MIT1002_02264	0.78	-0.8
2,520,172	-		MIT1002_02264	0.78	+0.9
2,520,182	-		MIT1002_02264	0.80	+3.0
2,520,187	+		MIT1002_02264	0.81	+0.2
2,520,465	+				-0.0
2,520,499	+				-1.4
2,520,507	-				-0.4
2,520,507	-				-0.4
2,520,512	-				-1.3
2,520,639	+				-0.6
2,520,639	-				-0.4
2,520,666	-				+1.2
2,520,677	+				+0.6
2,520,677	+				-0.9
2,520,677	+				+0.2
2,520,677	+				+0.1
2,520,677	+				+1.0
2,520,708	-				+0.4
2,520,843	-		MIT1002_02265	0.12	-0.2
2,520,897	-		MIT1002_02265	0.14	-1.4
2,520,923	+		MIT1002_02265	0.15	+0.9
2,521,085	+		MIT1002_02265	0.22	+0.4
2,521,149	-		MIT1002_02265	0.25	+0.5
2,521,156	-		MIT1002_02265	0.25	-1.4
2,521,193	-		MIT1002_02265	0.26	+0.3