Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02126

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,387,970	-		MIT1002_02125	0.45	-3.4
2,388,023	+		MIT1002_02125	0.48	-1.2
2,388,043	-		MIT1002_02125	0.50	-3.1
2,388,065	+		MIT1002_02125	0.51	-2.3
2,388,073	+		MIT1002_02125	0.52	-1.7
2,388,081	-		MIT1002_02125	0.52	-1.5
2,388,082	+		MIT1002_02125	0.52	-3.2
2,388,171	-		MIT1002_02125	0.58	-1.3
2,388,171	-		MIT1002_02125	0.58	-3.5
2,388,252	+		MIT1002_02125	0.63	-3.2
2,388,252	+		MIT1002_02125	0.63	-2.7
2,388,252	+		MIT1002_02125	0.63	-1.8
2,388,260	-		MIT1002_02125	0.63	-0.9
2,388,271	+		MIT1002_02125	0.64	-2.5
2,388,331	+		MIT1002_02125	0.68	-3.1
2,388,341	+		MIT1002_02125	0.69	+0.7
2,388,403	+		MIT1002_02125	0.73	-2.6
2,388,411	-		MIT1002_02125	0.73	-3.9
2,388,438	+		MIT1002_02125	0.75	-0.6
2,388,465	-		MIT1002_02125	0.76	-3.4
2,388,485	+		MIT1002_02125	0.78	-4.0
2,388,531	-		MIT1002_02125	0.81	-1.2
2,388,568	+		MIT1002_02125	0.83	-0.6
2,388,635	+		MIT1002_02125	0.87	-1.6
2,388,635	+		MIT1002_02125	0.87	-2.3
2,388,643	-		MIT1002_02125	0.88	-2.5
2,388,677	-				-3.2
2,388,705	-				-2.5
2,388,727	+				-0.9
2,388,779	+				+0.3
2,388,784	+				+0.5
2,388,826	+				+1.7
2,388,959	+				-1.4
2,388,959	+				-0.1
2,388,959	+				+0.1
2,388,959	+				-0.4
2,388,967	-				-0.4
2,388,967	-				-2.3
2,388,967	-				-1.2
2,388,967	-				-0.3
2,388,967	-				-2.6
2,388,969	+				-0.7
2,388,976	+				-1.0
2,388,984	-				+1.5
2,389,008	+				-0.8
2,389,043	-		MIT1002_02126	0.16	-1.4
2,389,121	+		MIT1002_02126	0.32	-1.0
2,389,138	+		MIT1002_02126	0.35	-0.9
2,389,204	-		MIT1002_02126	0.49	-1.1
2,389,486	+				-0.2
2,389,696	-		MIT1002_02127	0.54	-2.0
2,389,811	+		MIT1002_02127	0.78	+0.4
2,389,836	+		MIT1002_02127	0.84	-0.9
2,389,845	+		MIT1002_02127	0.85	-0.1
2,389,845	+		MIT1002_02127	0.85	-2.0
2,389,845	+		MIT1002_02127	0.85	-0.1
2,389,845	+		MIT1002_02127	0.85	-1.2
2,389,845	+		MIT1002_02127	0.85	-2.1
2,389,845	+		MIT1002_02127	0.85	-1.0
2,389,845	+		MIT1002_02127	0.85	-1.4
2,389,845	+		MIT1002_02127	0.85	-1.6
2,389,853	-		MIT1002_02127	0.87	-1.9
2,389,853	-		MIT1002_02127	0.87	+0.3
2,389,853	-		MIT1002_02127	0.87	-2.3
2,389,853	-		MIT1002_02127	0.87	+0.2
2,389,853	-		MIT1002_02127	0.87	-2.7
2,389,853	-		MIT1002_02127	0.87	+0.3
2,389,857	+		MIT1002_02127	0.88	-0.5
2,389,858	+		MIT1002_02127	0.88	-0.8
2,390,016	+				+0.6
2,390,043	-				-0.1
2,390,106	+		MIT1002_02128	0.14	-2.0
2,390,125	-		MIT1002_02128	0.18	+0.3
2,390,135	+		MIT1002_02128	0.20	+0.3
2,390,205	+		MIT1002_02128	0.35	-0.3
2,390,364	+		MIT1002_02128	0.68	-1.1
2,390,427	+		MIT1002_02128	0.81	-0.5
2,390,434	-		MIT1002_02128	0.83	-3.2