Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02041

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,292,431	+		MIT1002_02039	0.76	-0.9
2,292,431	+		MIT1002_02039	0.76	-0.5
2,292,439	-		MIT1002_02039	0.77	-2.0
2,292,439	-		MIT1002_02039	0.77	-0.8
2,292,439	-		MIT1002_02039	0.77	-0.7
2,292,690	-				-1.8
2,292,758	-				+1.0
2,292,816	+				-0.4
2,292,824	-				-0.2
2,292,824	-				+0.7
2,293,047	+				-0.9
2,293,047	+				-0.3
2,293,256	-		MIT1002_02040	0.61	+1.8
2,293,307	+				-0.2
2,293,424	+				-0.0
2,293,424	+				-1.4
2,293,432	-				+0.3
2,293,641	-		MIT1002_02041	0.41	-2.3
2,293,695	+		MIT1002_02041	0.52	-1.5
2,293,851	-		MIT1002_02041	0.82	-2.9
2,294,008	+				-0.3
2,294,061	+				-1.0
2,294,122	+				+0.4
2,294,130	-				-1.9
2,294,132	+				-0.3
2,294,192	+		MIT1002_02042	0.14	-0.2
2,294,212	-		MIT1002_02042	0.20	-1.8
2,294,299	+		MIT1002_02042	0.51	-2.3
2,294,546	+				+0.2
2,294,578	+				+0.2
2,294,612	-		MIT1002_02043	0.10	+0.2
2,294,612	-		MIT1002_02043	0.10	+0.4
2,294,640	-		MIT1002_02043	0.12	-0.4
2,294,688	-		MIT1002_02043	0.15	+1.2
2,294,689	+		MIT1002_02043	0.15	-0.1
2,294,740	-		MIT1002_02043	0.18	+0.1
2,294,802	-		MIT1002_02043	0.22	-2.4
2,294,906	-		MIT1002_02043	0.28	+0.8