Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01985

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,218,984	+				+0.3
2,218,994	+				-3.7
2,218,994	+				-1.6
2,218,994	+				-1.7
2,218,994	+				-3.1
2,218,994	+				-2.5
2,218,995	+				-2.5
2,219,002	-				-1.7
2,219,002	-				-2.7
2,219,083	+		MIT1002_01984	0.14	-1.4
2,219,159	-		MIT1002_01984	0.23	-2.5
2,219,182	-		MIT1002_01984	0.26	-3.9
2,219,182	-		MIT1002_01984	0.26	-2.1
2,219,206	-		MIT1002_01984	0.28	-3.4
2,219,374	-		MIT1002_01984	0.48	-3.1
2,219,374	-		MIT1002_01984	0.48	-1.7
2,219,469	-		MIT1002_01984	0.58	-0.1
2,219,526	+		MIT1002_01984	0.65	-3.7
2,219,526	+		MIT1002_01984	0.65	-1.5
2,219,526	+		MIT1002_01984	0.65	-3.3
2,219,526	+		MIT1002_01984	0.65	-3.7
2,219,526	+		MIT1002_01984	0.65	-2.4
2,219,534	-		MIT1002_01984	0.66	-1.9
2,219,534	-		MIT1002_01984	0.66	-2.1
2,219,534	-		MIT1002_01984	0.66	-1.1
2,219,546	-		MIT1002_01984	0.67	-1.3
2,219,552	+		MIT1002_01984	0.68	-2.7
2,219,598	+		MIT1002_01984	0.73	-3.7
2,219,605	+		MIT1002_01984	0.74	-1.6
2,219,720	-		MIT1002_01984	0.87	-2.1
2,219,875	+				+0.6
2,219,900	+				+0.7
2,219,926	+				+0.3
2,220,012	+		MIT1002_01985	0.16	+0.7
2,220,012	+		MIT1002_01985	0.16	-0.6
2,220,058	+		MIT1002_01985	0.21	-1.6
2,220,066	-		MIT1002_01985	0.21	-1.0
2,220,066	-		MIT1002_01985	0.21	-0.3
2,220,068	-		MIT1002_01985	0.22	-0.5
2,220,068	-		MIT1002_01985	0.22	-0.4
2,220,094	+		MIT1002_01985	0.25	+0.3
2,220,117	+		MIT1002_01985	0.27	-1.9
2,220,117	+		MIT1002_01985	0.27	-0.5
2,220,353	+		MIT1002_01985	0.53	-0.5
2,220,420	+		MIT1002_01985	0.60	+0.8
2,220,420	+		MIT1002_01985	0.60	+0.0
2,220,420	+		MIT1002_01985	0.60	-1.1
2,220,506	+		MIT1002_01985	0.70	-0.5
2,220,513	+		MIT1002_01985	0.71	-0.8
2,220,513	-		MIT1002_01985	0.71	+0.2
2,220,565	-		MIT1002_01985	0.76	-0.3
2,220,565	-		MIT1002_01985	0.76	-0.7
2,220,565	-		MIT1002_01985	0.76	-1.2
2,220,625	+		MIT1002_01985	0.83	-1.4
2,220,676	+		MIT1002_01985	0.89	-0.6
2,220,694	-				+0.1
2,220,837	-				+0.3
2,220,837	-				-0.1
2,220,893	+				-1.0
2,220,893	+				-0.2
2,220,965	+				-0.1
2,220,965	+				+0.2
2,220,966	+				+0.5
2,220,967	+				+0.9
2,220,967	+				-0.1
2,220,967	+				+1.7
2,220,973	-				-0.5
2,220,975	-				+0.1
2,221,244	+		MIT1002_01986	0.20	-1.5
2,221,299	+		MIT1002_01986	0.23	+1.2
2,221,299	+		MIT1002_01986	0.23	-0.9
2,221,299	+		MIT1002_01986	0.23	+0.5
2,221,475	-		MIT1002_01986	0.33	+0.4
2,221,506	-		MIT1002_01986	0.34	-0.2
2,221,573	-		MIT1002_01986	0.38	-1.4
2,221,588	-		MIT1002_01986	0.39	+0.0
2,221,693	-		MIT1002_01986	0.45	-0.2
2,221,715	-		MIT1002_01986	0.46	-2.5
2,221,736	-		MIT1002_01986	0.47	-0.1