Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01967

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,198,243	+		MIT1002_01966	0.65	-1.6
2,198,251	-		MIT1002_01966	0.65	+0.5
2,198,268	-		MIT1002_01966	0.66	+0.5
2,198,332	+		MIT1002_01966	0.69	-0.3
2,198,337	+		MIT1002_01966	0.69	+0.1
2,198,357	+		MIT1002_01966	0.69	-0.9
2,198,507	+		MIT1002_01966	0.75	-0.4
2,198,525	-		MIT1002_01966	0.76	+1.3
2,198,539	+		MIT1002_01966	0.76	-0.1
2,198,547	-		MIT1002_01966	0.77	-0.1
2,198,552	-		MIT1002_01966	0.77	-1.1
2,198,608	-		MIT1002_01966	0.79	+0.4
2,198,616	-		MIT1002_01966	0.79	-0.6
2,198,642	+		MIT1002_01966	0.80	+1.2
2,198,650	-		MIT1002_01966	0.81	+0.5
2,198,658	-		MIT1002_01966	0.81	-0.2
2,198,710	+		MIT1002_01966	0.83	+1.0
2,198,712	+		MIT1002_01966	0.83	-1.1
2,198,799	-		MIT1002_01966	0.86	-0.8
2,198,917	+				+0.8
2,198,995	+				-0.2
2,199,005	+				+0.8
2,199,005	+				+0.1
2,199,005	+				+0.5
2,199,005	+				+1.7
2,199,005	+				-0.5
2,199,013	-				-0.1
2,199,013	-				-0.8
2,199,038	-				+6.2
2,199,154	+				-0.7
2,199,185	-				-1.3
2,199,185	-				-0.9
2,199,242	-				-1.5
2,200,751	-				-0.6
2,200,768	-				-0.8
2,200,966	+				-0.1
2,200,967	-				-0.3
2,201,014	-				-0.6
2,201,031	-				+0.1
2,201,039	+				-0.9
2,201,148	+		MIT1002_01968	0.12	+0.8
2,201,156	-		MIT1002_01968	0.13	+0.6
2,201,188	+		MIT1002_01968	0.14	+0.2
2,201,212	-		MIT1002_01968	0.15	+1.4
2,201,244	+		MIT1002_01968	0.16	+1.3
2,201,263	+		MIT1002_01968	0.17	+0.3
2,201,310	+		MIT1002_01968	0.19	+0.6
2,201,310	+		MIT1002_01968	0.19	-2.3
2,201,310	+		MIT1002_01968	0.19	-0.3
2,201,318	-		MIT1002_01968	0.19	-0.7
2,201,318	-		MIT1002_01968	0.19	+0.3
2,201,373	-		MIT1002_01968	0.21	-0.0
2,201,373	-		MIT1002_01968	0.21	-0.9
2,201,373	-		MIT1002_01968	0.21	-0.5
2,201,373	-		MIT1002_01968	0.21	-0.3
2,201,375	+		MIT1002_01968	0.21	-1.4
2,201,408	+		MIT1002_01968	0.23	+0.5
2,201,442	+		MIT1002_01968	0.24	+1.3
2,201,478	+		MIT1002_01968	0.26	-2.3
2,201,478	-		MIT1002_01968	0.26	-0.2
2,201,481	-		MIT1002_01968	0.26	-0.3
2,201,497	+		MIT1002_01968	0.26	-2.1
2,201,534	-		MIT1002_01968	0.28	-1.3