Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01923

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,132,377	+		MIT1002_01922	0.73	-3.2
2,132,385	-		MIT1002_01922	0.73	-0.7
2,132,465	-		MIT1002_01922	0.75	-0.3
2,132,472	+		MIT1002_01922	0.75	-2.3
2,132,472	+		MIT1002_01922	0.75	+0.4
2,132,481	+		MIT1002_01922	0.75	-0.5
2,132,486	+		MIT1002_01922	0.76	-0.3
2,132,546	+		MIT1002_01922	0.77	+0.7
2,132,610	+		MIT1002_01922	0.79	+0.4
2,132,632	-		MIT1002_01922	0.80	+0.3
2,132,751	-		MIT1002_01922	0.83	-0.7
2,132,826	-		MIT1002_01922	0.85	+0.6
2,132,842	+		MIT1002_01922	0.86	-2.3
2,132,843	-		MIT1002_01922	0.86	-0.5
2,132,892	+		MIT1002_01922	0.87	-0.2
2,132,900	-		MIT1002_01922	0.87	-0.5
2,132,910	-		MIT1002_01922	0.88	-1.3
2,132,910	-		MIT1002_01922	0.88	+1.2
2,132,957	-		MIT1002_01922	0.89	-1.4
2,132,958	+		MIT1002_01922	0.89	-0.2
2,133,007	+				+0.3
2,133,154	-				-1.8
2,133,196	+				-0.7
2,133,267	+				+1.1
2,133,306	+				+1.2
2,133,323	+				+0.1
2,133,323	+				-2.1
2,133,323	+				-0.4
2,133,331	-				-0.8
2,133,331	-				-2.4
2,133,331	-				-1.5
2,133,459	+				-2.6
2,133,562	+		MIT1002_01923	0.12	-0.3
2,133,598	+		MIT1002_01923	0.15	-2.3
2,133,960	+		MIT1002_01923	0.38	-1.5
2,133,973	+		MIT1002_01923	0.38	+0.3
2,134,022	+		MIT1002_01923	0.42	-4.2
2,134,057	+		MIT1002_01923	0.44	-2.9
2,134,074	-		MIT1002_01923	0.45	-1.2
2,134,178	-		MIT1002_01923	0.51	+0.3
2,134,200	+		MIT1002_01923	0.53	-1.0
2,134,200	+		MIT1002_01923	0.53	-2.3
2,134,200	+		MIT1002_01923	0.53	-0.3
2,134,200	+		MIT1002_01923	0.53	-1.0
2,134,262	+		MIT1002_01923	0.57	-2.3
2,134,264	+		MIT1002_01923	0.57	-2.2
2,134,467	-		MIT1002_01923	0.70	-1.5
2,134,576	+		MIT1002_01923	0.77	-1.9
2,134,594	+		MIT1002_01923	0.78	-0.8
2,134,594	+		MIT1002_01923	0.78	-2.4
2,134,594	+		MIT1002_01923	0.78	-2.0
2,134,747	-		MIT1002_01923	0.87	-2.7
2,134,749	+		MIT1002_01923	0.88	-3.7
2,134,770	+		MIT1002_01923	0.89	-2.6
2,134,778	+		MIT1002_01923	0.89	-1.9
2,134,880	+				-1.2
2,134,887	-				-0.0
2,134,923	+				+0.0
2,134,931	-				-1.2
2,134,981	+				-0.7
2,135,056	-				-0.1
2,135,081	+				+0.3
2,135,096	-				+1.1
2,135,201	+				-0.9