Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01885

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
2,097,072	+		MIT1002_01884	0.13	+0.8
2,097,087	-		MIT1002_01884	0.15	-0.5
2,097,211	+		MIT1002_01884	0.26	-1.2
2,097,228	-		MIT1002_01884	0.27	-0.6
2,097,409	+		MIT1002_01884	0.44	-0.3
2,097,427	-		MIT1002_01884	0.45	-1.2
2,097,434	-		MIT1002_01884	0.46	-0.8
2,097,441	-		MIT1002_01884	0.47	-3.1
2,097,542	-		MIT1002_01884	0.56	+0.6
2,097,578	-		MIT1002_01884	0.59	-0.8
2,097,602	+		MIT1002_01884	0.61	-0.2
2,097,689	-		MIT1002_01884	0.69	-5.0
2,097,755	-		MIT1002_01884	0.75	-1.0
2,097,755	-		MIT1002_01884	0.75	-1.6
2,097,799	+		MIT1002_01884	0.79	-3.0
2,097,805	+		MIT1002_01884	0.79	-0.2
2,097,840	+		MIT1002_01884	0.83	-1.2
2,097,865	-		MIT1002_01884	0.85	-2.5
2,097,881	+		MIT1002_01884	0.86	-1.0
2,097,881	+		MIT1002_01884	0.86	-0.3
2,097,881	+		MIT1002_01884	0.86	-0.0
2,097,881	+		MIT1002_01884	0.86	+1.0
2,097,889	-		MIT1002_01884	0.87	-3.2
2,098,000	+				-2.6
2,098,113	+				-2.9
2,098,205	+		MIT1002_01885	0.14	-3.9
2,098,329	+		MIT1002_01885	0.24	-3.0
2,098,329	+		MIT1002_01885	0.24	-2.3
2,098,367	+		MIT1002_01885	0.27	-2.7
2,098,375	-		MIT1002_01885	0.28	-3.3
2,098,408	-		MIT1002_01885	0.30	-2.3
2,098,408	-		MIT1002_01885	0.30	-1.8
2,098,489	-		MIT1002_01885	0.37	-4.5
2,098,553	-		MIT1002_01885	0.42	-0.9
2,098,591	+		MIT1002_01885	0.45	-2.1
2,098,592	-		MIT1002_01885	0.45	-6.0
2,098,686	+		MIT1002_01885	0.53	-2.0
2,098,702	-		MIT1002_01885	0.54	-0.9
2,098,702	-		MIT1002_01885	0.54	-2.0
2,098,720	-		MIT1002_01885	0.55	-1.3
2,098,780	+		MIT1002_01885	0.60	-2.7
2,098,790	+		MIT1002_01885	0.61	-2.3
2,098,790	+		MIT1002_01885	0.61	-4.1
2,098,807	+		MIT1002_01885	0.62	-5.1
2,098,812	+		MIT1002_01885	0.63	-2.6
2,098,815	-		MIT1002_01885	0.63	-1.4
2,098,820	-		MIT1002_01885	0.63	-3.7
2,098,884	-		MIT1002_01885	0.69	-0.7
2,098,921	+		MIT1002_01885	0.71	-2.8
2,098,982	+		MIT1002_01885	0.76	-2.2
2,099,027	+		MIT1002_01885	0.80	-2.7
2,099,047	-		MIT1002_01885	0.82	-4.8
2,099,105	-		MIT1002_01885	0.86	-0.7
2,099,185	+				-6.2
2,099,200	-				-3.2
2,099,214	+				-4.0
2,099,214	+				-0.9
2,099,222	-				-3.3
2,099,222	-				-2.6
2,099,423	+				-0.4
2,099,423	+				+1.6
2,099,544	+		MIT1002_01886	0.14	-0.2
2,099,596	-		MIT1002_01886	0.20	+0.3
2,099,610	-		MIT1002_01886	0.21	-0.5
2,099,667	+		MIT1002_01886	0.27	-0.1
2,099,685	-		MIT1002_01886	0.29	-0.5
2,099,719	-		MIT1002_01886	0.33	-0.4
2,099,760	+		MIT1002_01886	0.37	+0.2
2,099,760	+		MIT1002_01886	0.37	-0.1
2,099,765	+		MIT1002_01886	0.38	-0.1
2,099,765	+		MIT1002_01886	0.38	-1.9
2,099,768	-		MIT1002_01886	0.38	-1.2
2,099,773	+		MIT1002_01886	0.38	+1.1
2,099,773	-		MIT1002_01886	0.38	+0.6
2,099,773	-		MIT1002_01886	0.38	+0.2
2,099,823	+		MIT1002_01886	0.44	-0.2
2,099,831	-		MIT1002_01886	0.45	+0.0
2,099,831	-		MIT1002_01886	0.45	-0.6
2,099,851	+		MIT1002_01886	0.47	-0.3
2,099,889	+		MIT1002_01886	0.51	-2.2
2,099,908	+		MIT1002_01886	0.53	+0.7
2,099,990	+		MIT1002_01886	0.61	-0.2
2,100,058	-		MIT1002_01886	0.68	-1.2
2,100,063	-		MIT1002_01886	0.69	+0.3
2,100,121	-		MIT1002_01886	0.75	-0.2
2,100,190	+		MIT1002_01886	0.82	+0.2
2,100,224	+		MIT1002_01886	0.86	-0.3
2,100,224	+		MIT1002_01886	0.86	-1.7
2,100,224	+		MIT1002_01886	0.86	+0.3
2,100,232	-		MIT1002_01886	0.87	-3.0
2,100,232	-		MIT1002_01886	0.87	-0.8