Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01749

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,941,480	-				+1.2
1,941,480	-				+1.8
1,941,482	-				-1.4
1,941,520	+				+0.0
1,941,551	+		MIT1002_01748	0.14	-1.0
1,941,595	+		MIT1002_01748	0.19	-0.7
1,941,595	+		MIT1002_01748	0.19	+0.8
1,941,595	+		MIT1002_01748	0.19	+0.4
1,941,603	-		MIT1002_01748	0.21	+1.1
1,941,613	-		MIT1002_01748	0.22	+0.3
1,941,680	+		MIT1002_01748	0.31	-0.5
1,941,691	-		MIT1002_01748	0.32	+0.3
1,941,747	+		MIT1002_01748	0.39	+0.3
1,941,769	-		MIT1002_01748	0.42	+0.2
1,941,845	+		MIT1002_01748	0.52	-1.0
1,941,853	-		MIT1002_01748	0.53	+0.6
1,941,904	-		MIT1002_01748	0.60	-1.7
1,941,917	+		MIT1002_01748	0.62	+0.1
1,941,917	+		MIT1002_01748	0.62	+0.4
1,941,923	-		MIT1002_01748	0.62	-2.2
1,941,923	-		MIT1002_01748	0.62	+0.3
1,941,923	-		MIT1002_01748	0.62	-0.1
1,941,923	-		MIT1002_01748	0.62	-1.3
1,941,953	-		MIT1002_01748	0.66	+0.7
1,941,986	-		MIT1002_01748	0.71	+0.4
1,942,145	+				+0.1
1,942,220	-				-0.2
1,942,351	+		MIT1002_01749	0.10	-1.0
1,942,351	+		MIT1002_01749	0.10	+0.3
1,942,351	+		MIT1002_01749	0.10	-1.1
1,942,351	+		MIT1002_01749	0.10	+0.1
1,942,351	+		MIT1002_01749	0.10	-0.2
1,942,351	+		MIT1002_01749	0.10	-0.7
1,942,351	+		MIT1002_01749	0.10	+1.0
1,942,351	+		MIT1002_01749	0.10	+2.3
1,942,358	-		MIT1002_01749	0.11	+1.9
1,942,358	-		MIT1002_01749	0.11	+0.0
1,942,359	-		MIT1002_01749	0.11	-0.6
1,942,359	-		MIT1002_01749	0.11	+0.9
1,942,359	-		MIT1002_01749	0.11	+0.8
1,942,359	-		MIT1002_01749	0.11	-1.7
1,942,359	-		MIT1002_01749	0.11	+0.3
1,942,359	-		MIT1002_01749	0.11	-0.3
1,942,359	-		MIT1002_01749	0.11	-0.8
1,942,359	-		MIT1002_01749	0.11	-1.0
1,942,426	-		MIT1002_01749	0.19	+0.0
1,942,437	-		MIT1002_01749	0.20	+1.3
1,942,492	-		MIT1002_01749	0.26	+2.2
1,942,550	+		MIT1002_01749	0.32	-0.0
1,942,603	+		MIT1002_01749	0.38	-0.1
1,942,611	-		MIT1002_01749	0.39	+0.4
1,942,611	-		MIT1002_01749	0.39	+1.0
1,942,635	+		MIT1002_01749	0.42	+0.6
1,942,689	+		MIT1002_01749	0.47	-0.8
1,942,712	+		MIT1002_01749	0.50	+0.0
1,942,717	+		MIT1002_01749	0.50	+1.1
1,942,720	-		MIT1002_01749	0.51	+0.7
1,942,727	+		MIT1002_01749	0.52	+0.5
1,942,737	+		MIT1002_01749	0.53	-1.4
1,942,745	-		MIT1002_01749	0.54	-1.0
1,942,874	+		MIT1002_01749	0.68	+0.0
1,942,988	+		MIT1002_01749	0.80	-1.5
1,943,020	-		MIT1002_01749	0.84	+1.7
1,943,089	+				-0.2
1,943,153	+				+0.3
1,943,153	+				-1.9
1,943,161	-				+1.7
1,943,266	+				+0.1
1,943,272	-				+0.9
1,943,278	-				-0.7
1,943,364	+				+0.8
1,943,405	+				+0.8
1,943,405	+				+0.1
1,943,459	-				-0.7
1,943,504	+				-1.2
1,943,512	-				-1.0
1,943,518	+				+0.7
1,943,518	+				+2.3
1,943,518	+				+0.2
1,943,535	+				-0.1
1,943,535	+				+0.6
1,943,543	-				+0.3
1,943,571	-				+0.8
1,943,611	+				+0.8
1,943,711	+		MIT1002_01750	0.14	-0.2
1,943,711	+		MIT1002_01750	0.14	+0.8
1,943,711	+		MIT1002_01750	0.14	+0.0
1,943,711	+		MIT1002_01750	0.14	+0.2
1,943,719	-		MIT1002_01750	0.14	-0.4
1,943,734	+		MIT1002_01750	0.15	+0.1
1,943,742	-		MIT1002_01750	0.15	+1.9
1,943,799	-		MIT1002_01750	0.18	+1.0
1,943,808	-		MIT1002_01750	0.19	+0.9
1,943,809	-		MIT1002_01750	0.19	+0.3
1,943,902	+		MIT1002_01750	0.23	-0.7
1,944,025	+		MIT1002_01750	0.29	+0.3
1,944,035	+		MIT1002_01750	0.29	-0.3
1,944,035	+		MIT1002_01750	0.29	-0.6
1,944,035	+		MIT1002_01750	0.29	-1.5
1,944,035	+		MIT1002_01750	0.29	-0.5
1,944,035	+		MIT1002_01750	0.29	+0.3
1,944,035	+		MIT1002_01750	0.29	-0.5
1,944,035	+		MIT1002_01750	0.29	+0.7
1,944,035	+		MIT1002_01750	0.29	-0.4
1,944,035	+		MIT1002_01750	0.29	-1.1
1,944,043	-		MIT1002_01750	0.30	-0.8
1,944,043	-		MIT1002_01750	0.30	-0.6
1,944,062	+		MIT1002_01750	0.30	-0.6