Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01727

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01725 and MIT1002_01726 are separated by 3 nucleotidesMIT1002_01726 and MIT1002_01727 are separated by 51 nucleotidesMIT1002_01727 and MIT1002_01728 are separated by 129 nucleotidesMIT1002_01728 and MIT1002_01729 are separated by 3 nucleotidesMIT1002_01729 and MIT1002_01730 are separated by 45 nucleotides MIT1002_01725: MIT1002_01725 - Ribosomal large subunit pseudouridine synthase C, at 1,919,590 to 1,920,531 _01725 MIT1002_01726: MIT1002_01726 - 5'-nucleotidase, at 1,920,535 to 1,921,242 _01726 MIT1002_01727: MIT1002_01727 - Maf-like protein YceF, at 1,921,294 to 1,921,914 _01727 MIT1002_01728: MIT1002_01728 - hypothetical protein, at 1,922,044 to 1,922,601 _01728 MIT1002_01729: MIT1002_01729 - 50S ribosomal protein L32, at 1,922,605 to 1,922,775 _01729 MIT1002_01730: MIT1002_01730 - Phosphate acyltransferase, at 1,922,821 to 1,923,816 _01730 Position (kb) 1921 1922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1920.332 kb on + strand, within MIT1002_01725at 1920.392 kb on + strand, within MIT1002_01725at 1920.409 kb on + strand, within MIT1002_01725at 1920.417 kb on - strand, within MIT1002_01725at 1920.417 kb on - strand, within MIT1002_01725at 1920.440 kb on + strandat 1920.448 kb on + strandat 1920.507 kb on + strandat 1920.507 kb on + strandat 1920.685 kb on - strand, within MIT1002_01726at 1920.692 kb on - strand, within MIT1002_01726at 1920.700 kb on + strand, within MIT1002_01726at 1920.748 kb on - strand, within MIT1002_01726at 1920.748 kb on - strand, within MIT1002_01726at 1920.752 kb on + strand, within MIT1002_01726at 1920.863 kb on + strand, within MIT1002_01726at 1920.863 kb on + strand, within MIT1002_01726at 1920.930 kb on - strand, within MIT1002_01726at 1921.033 kb on + strand, within MIT1002_01726at 1921.033 kb on + strand, within MIT1002_01726at 1921.039 kb on - strand, within MIT1002_01726at 1921.104 kb on - strand, within MIT1002_01726at 1921.105 kb on - strand, within MIT1002_01726at 1921.144 kb on - strand, within MIT1002_01726at 1921.150 kb on - strand, within MIT1002_01726at 1921.154 kb on - strand, within MIT1002_01726at 1921.154 kb on - strand, within MIT1002_01726at 1921.190 kb on - strandat 1921.198 kb on + strandat 1921.198 kb on + strandat 1921.198 kb on + strandat 1921.206 kb on - strandat 1921.206 kb on - strandat 1921.206 kb on - strandat 1921.206 kb on - strandat 1921.208 kb on + strandat 1921.255 kb on - strandat 1921.289 kb on + strandat 1921.413 kb on + strand, within MIT1002_01727at 1921.413 kb on + strand, within MIT1002_01727at 1921.413 kb on + strand, within MIT1002_01727at 1921.421 kb on - strand, within MIT1002_01727at 1921.479 kb on - strand, within MIT1002_01727at 1921.558 kb on + strand, within MIT1002_01727at 1921.571 kb on - strand, within MIT1002_01727at 1921.588 kb on - strand, within MIT1002_01727at 1921.838 kb on + strand, within MIT1002_01727at 1921.894 kb on + strandat 1921.899 kb on + strandat 1921.899 kb on + strandat 1921.902 kb on - strandat 1921.922 kb on - strandat 1921.967 kb on - strandat 1921.991 kb on - strandat 1922.843 kb on + strandat 1922.880 kb on - strandat 1922.887 kb on + strandat 1922.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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1,920,332 + MIT1002_01725 0.79 +1.0
1,920,392 + MIT1002_01725 0.85 +0.4
1,920,409 + MIT1002_01725 0.87 +0.2
1,920,417 - MIT1002_01725 0.88 +0.7
1,920,417 - MIT1002_01725 0.88 +0.4
1,920,440 + -0.1
1,920,448 + +0.5
1,920,507 + -0.7
1,920,507 + +0.8
1,920,685 - MIT1002_01726 0.21 +1.1
1,920,692 - MIT1002_01726 0.22 +0.5
1,920,700 + MIT1002_01726 0.23 +0.1
1,920,748 - MIT1002_01726 0.30 +0.0
1,920,748 - MIT1002_01726 0.30 +0.9
1,920,752 + MIT1002_01726 0.31 -2.9
1,920,863 + MIT1002_01726 0.46 +0.1
1,920,863 + MIT1002_01726 0.46 +0.4
1,920,930 - MIT1002_01726 0.56 -1.6
1,921,033 + MIT1002_01726 0.70 -0.5
1,921,033 + MIT1002_01726 0.70 -0.2
1,921,039 - MIT1002_01726 0.71 +1.7
1,921,104 - MIT1002_01726 0.80 -0.2
1,921,105 - MIT1002_01726 0.81 -0.2
1,921,144 - MIT1002_01726 0.86 -1.6
1,921,150 - MIT1002_01726 0.87 +0.5
1,921,154 - MIT1002_01726 0.87 +1.7
1,921,154 - MIT1002_01726 0.87 +0.2
1,921,190 - +0.3
1,921,198 + -2.6
1,921,198 + +0.5
1,921,198 + -2.2
1,921,206 - +0.2
1,921,206 - -0.1
1,921,206 - +0.6
1,921,206 - +0.8
1,921,208 + +1.1
1,921,255 - +1.6
1,921,289 + +0.7
1,921,413 + MIT1002_01727 0.19 -0.4
1,921,413 + MIT1002_01727 0.19 -0.3
1,921,413 + MIT1002_01727 0.19 +0.8
1,921,421 - MIT1002_01727 0.20 +1.5
1,921,479 - MIT1002_01727 0.30 -0.7
1,921,558 + MIT1002_01727 0.43 -0.6
1,921,571 - MIT1002_01727 0.45 +0.0
1,921,588 - MIT1002_01727 0.47 -1.2
1,921,838 + MIT1002_01727 0.88 -0.7
1,921,894 + +0.5
1,921,899 + +2.6
1,921,899 + +0.4
1,921,902 - +0.3
1,921,922 - +0.7
1,921,967 - -1.8
1,921,991 - -1.5
1,922,843 + -1.8
1,922,880 - +0.1
1,922,887 + -0.9
1,922,895 - -1.0

Or see this region's nucleotide sequence