Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01511

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01509 and MIT1002_01510 are separated by 33 nucleotidesMIT1002_01510 and MIT1002_01511 are separated by 33 nucleotidesMIT1002_01511 and MIT1002_01512 overlap by 1 nucleotidesMIT1002_01512 and MIT1002_01513 are separated by 131 nucleotides MIT1002_01509: MIT1002_01509 - Ribose-phosphate pyrophosphokinase, at 1,660,288 to 1,661,235 _01509 MIT1002_01510: MIT1002_01510 - tRNA-Gln, at 1,661,269 to 1,661,344 _01510 MIT1002_01511: MIT1002_01511 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 1,661,378 to 1,662,244 _01511 MIT1002_01512: MIT1002_01512 - Outer-membrane lipoprotein LolB precursor, at 1,662,244 to 1,662,870 _01512 MIT1002_01513: MIT1002_01513 - Glutamyl-tRNA reductase, at 1,663,002 to 1,664,276 _01513 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -1 0 1at 1662.950 kb on - strandat 1662.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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1,662,950 - +0.6
1,662,975 + +1.0

Or see this region's nucleotide sequence