Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01382

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,532,943	+		MIT1002_01381	0.15	-1.1
1,532,985	+		MIT1002_01381	0.19	-2.4
1,532,993	-		MIT1002_01381	0.20	-3.6
1,532,993	-		MIT1002_01381	0.20	-1.0
1,533,020	+		MIT1002_01381	0.22	-0.9
1,533,026	+		MIT1002_01381	0.23	+0.3
1,533,037	+		MIT1002_01381	0.24	-2.9
1,533,039	+		MIT1002_01381	0.24	-2.1
1,533,053	-		MIT1002_01381	0.25	-2.4
1,533,083	-		MIT1002_01381	0.28	-3.1
1,533,083	-		MIT1002_01381	0.28	-2.3
1,533,167	+		MIT1002_01381	0.35	-4.4
1,533,170	-		MIT1002_01381	0.36	-2.3
1,533,170	-		MIT1002_01381	0.36	-3.3
1,533,172	+		MIT1002_01381	0.36	-2.0
1,533,231	-		MIT1002_01381	0.41	-0.9
1,533,233	+		MIT1002_01381	0.41	-2.4
1,533,306	+		MIT1002_01381	0.48	-4.5
1,533,315	+		MIT1002_01381	0.49	+0.1
1,533,323	-		MIT1002_01381	0.50	-1.9
1,533,323	-		MIT1002_01381	0.50	-5.0
1,533,323	-		MIT1002_01381	0.50	+0.4
1,533,335	-		MIT1002_01381	0.51	-1.8
1,533,383	+		MIT1002_01381	0.55	-2.0
1,533,383	+		MIT1002_01381	0.55	-2.1
1,533,383	+		MIT1002_01381	0.55	-3.4
1,533,383	+		MIT1002_01381	0.55	-2.6
1,533,383	+		MIT1002_01381	0.55	-1.8
1,533,391	-		MIT1002_01381	0.56	-2.6
1,533,391	-		MIT1002_01381	0.56	-0.6
1,533,463	+		MIT1002_01381	0.62	-4.2
1,533,471	-		MIT1002_01381	0.63	-4.8
1,533,554	+		MIT1002_01381	0.70	-1.8
1,533,562	-		MIT1002_01381	0.71	-3.2
1,533,590	+		MIT1002_01381	0.74	-3.1
1,533,606	-		MIT1002_01381	0.75	-2.5
1,533,639	-		MIT1002_01381	0.78	-4.7
1,533,674	+		MIT1002_01381	0.81	-4.7
1,533,692	+		MIT1002_01381	0.83	-3.5
1,533,697	+		MIT1002_01381	0.83	-1.8
1,533,728	+		MIT1002_01381	0.86	-2.1
1,533,733	+		MIT1002_01381	0.87	-0.6
1,533,735	-		MIT1002_01381	0.87	-4.1
1,533,852	+				-2.3
1,533,891	-				-5.0
1,533,913	+				-1.7
1,533,940	+				-3.3
1,533,948	-				-2.9
1,533,948	-				-2.2
1,533,948	-				-3.3
1,534,009	+		MIT1002_01382	0.17	-4.1
1,534,009	+		MIT1002_01382	0.17	-3.1
1,534,015	-		MIT1002_01382	0.18	-1.7
1,534,017	-		MIT1002_01382	0.18	-4.2
1,534,214	-		MIT1002_01382	0.44	-4.1
1,534,236	+		MIT1002_01382	0.47	-2.2
1,534,257	+		MIT1002_01382	0.50	-0.9
1,534,313	-		MIT1002_01382	0.57	-4.7
1,534,313	-		MIT1002_01382	0.57	-4.7
1,534,318	-		MIT1002_01382	0.57	-3.2
1,534,326	-		MIT1002_01382	0.58	-3.4
1,534,332	+		MIT1002_01382	0.59	-1.5
1,534,345	+		MIT1002_01382	0.61	-2.3
1,534,345	+		MIT1002_01382	0.61	-0.2
1,534,345	+		MIT1002_01382	0.61	-6.0
1,534,353	-		MIT1002_01382	0.62	-0.9
1,534,407	-		MIT1002_01382	0.69	-1.4
1,534,493	+		MIT1002_01382	0.80	-3.0
1,534,543	-		MIT1002_01382	0.87	-3.4
1,534,545	+		MIT1002_01382	0.87	-3.2
1,534,547	+		MIT1002_01382	0.87	-3.4
1,534,744	-		MIT1002_01383	0.18	-0.1
1,534,744	-		MIT1002_01383	0.18	+0.1
1,534,749	-		MIT1002_01383	0.18	+0.6
1,534,749	-		MIT1002_01383	0.18	-0.1
1,534,749	-		MIT1002_01383	0.18	+0.7
1,534,749	-		MIT1002_01383	0.18	+0.3
1,534,749	-		MIT1002_01383	0.18	+0.4
1,534,773	-		MIT1002_01383	0.22	-1.0
1,534,779	+		MIT1002_01383	0.23	+0.1
1,535,133	+		MIT1002_01383	0.72	+0.2
1,535,141	-		MIT1002_01383	0.73	+1.1
1,535,143	-		MIT1002_01383	0.73	+1.6
1,535,148	+		MIT1002_01383	0.74	+0.3
1,535,221	-		MIT1002_01383	0.84	-0.8
1,535,225	+		MIT1002_01383	0.84	-1.2
1,535,283	+				+0.6
1,535,315	-				+0.0
1,535,402	+				-1.8
1,535,404	+				-0.4
1,535,418	+				-0.3
1,535,450	-				+0.1
1,535,522	-		MIT1002_01384	0.19	+0.4
1,535,522	-		MIT1002_01384	0.19	-1.5
1,535,522	-		MIT1002_01384	0.19	-1.7
1,535,524	-		MIT1002_01384	0.19	-1.3