Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01379

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,529,297	+		MIT1002_01378	0.28	-3.1
1,529,317	-		MIT1002_01378	0.29	-3.0
1,529,324	+		MIT1002_01378	0.30	-1.9
1,529,324	+		MIT1002_01378	0.30	+0.4
1,529,329	+		MIT1002_01378	0.30	-2.3
1,529,338	+		MIT1002_01378	0.31	-2.5
1,529,356	-		MIT1002_01378	0.32	-2.3
1,529,356	-		MIT1002_01378	0.32	-1.3
1,529,395	+		MIT1002_01378	0.35	-2.6
1,529,424	+		MIT1002_01378	0.38	-2.6
1,529,424	+		MIT1002_01378	0.38	-0.6
1,529,439	+		MIT1002_01378	0.39	-2.7
1,529,439	+		MIT1002_01378	0.39	-2.6
1,529,447	-		MIT1002_01378	0.39	-2.1
1,529,447	-		MIT1002_01378	0.39	-2.8
1,529,495	+		MIT1002_01378	0.43	-2.0
1,529,540	+		MIT1002_01378	0.46	-2.8
1,529,555	-		MIT1002_01378	0.47	-2.1
1,529,561	-		MIT1002_01378	0.48	-4.2
1,529,594	-		MIT1002_01378	0.50	-2.5
1,529,735	+		MIT1002_01378	0.61	-2.5
1,529,813	-		MIT1002_01378	0.67	-2.3
1,529,828	-		MIT1002_01378	0.68	+0.4
1,529,868	-		MIT1002_01378	0.71	-2.2
1,529,872	+		MIT1002_01378	0.71	-1.7
1,529,886	+		MIT1002_01378	0.72	-3.2
1,529,894	-		MIT1002_01378	0.73	-0.4
1,529,894	-		MIT1002_01378	0.73	-2.3
1,529,894	-		MIT1002_01378	0.73	-0.1
1,529,894	-		MIT1002_01378	0.73	-3.4
1,529,945	+		MIT1002_01378	0.77	-4.8
1,530,003	+		MIT1002_01378	0.81	-5.7
1,530,008	+		MIT1002_01378	0.82	-3.8
1,530,013	+		MIT1002_01378	0.82	-0.1
1,530,016	-		MIT1002_01378	0.82	-6.5
1,530,017	+		MIT1002_01378	0.82	-2.8
1,530,084	+		MIT1002_01378	0.87	-2.6
1,530,084	+		MIT1002_01378	0.87	-1.6
1,530,144	+				-4.3
1,530,145	+				-6.3
1,530,145	+				-0.4
1,530,145	+				-4.4
1,530,145	+				-3.6
1,530,151	-				-2.8
1,530,151	-				-2.2
1,530,153	-				-2.9
1,530,153	-				-1.6
1,530,153	-				-3.9
1,530,153	-				-0.7
1,530,153	-				-1.5
1,530,253	+				-2.0
1,530,253	+				-2.5
1,530,253	+				-5.6
1,530,261	-				-1.9
1,530,377	+				-3.9
1,530,525	-		MIT1002_01379	0.21	-3.1
1,530,660	-		MIT1002_01379	0.33	-0.9
1,530,695	+		MIT1002_01379	0.36	-1.4
1,530,695	-		MIT1002_01379	0.36	-3.3
1,530,710	+		MIT1002_01379	0.37	-4.0
1,530,710	-		MIT1002_01379	0.37	-3.3
1,530,727	-		MIT1002_01379	0.39	-0.7
1,530,782	+		MIT1002_01379	0.44	-3.6
1,530,782	+		MIT1002_01379	0.44	-2.4
1,530,830	+		MIT1002_01379	0.48	-3.5
1,530,833	-		MIT1002_01379	0.48	-3.6
1,530,838	-		MIT1002_01379	0.49	-3.8
1,530,880	-		MIT1002_01379	0.52	-3.7
1,530,909	+		MIT1002_01379	0.55	-2.1
1,530,932	+		MIT1002_01379	0.57	-1.9
1,530,932	+		MIT1002_01379	0.57	-3.4
1,530,957	+		MIT1002_01379	0.59	-1.6
1,530,957	+		MIT1002_01379	0.59	-1.4
1,530,967	+		MIT1002_01379	0.60	-0.9
1,530,967	+		MIT1002_01379	0.60	-6.9
1,530,967	+		MIT1002_01379	0.60	-2.4
1,530,967	+		MIT1002_01379	0.60	-2.6
1,530,967	+		MIT1002_01379	0.60	-6.8
1,530,967	+		MIT1002_01379	0.60	-3.2
1,530,975	-		MIT1002_01379	0.61	-7.7
1,530,975	-		MIT1002_01379	0.61	-1.1
1,530,975	-		MIT1002_01379	0.61	-3.5
1,530,975	-		MIT1002_01379	0.61	-2.5
1,530,975	-		MIT1002_01379	0.61	-2.7
1,531,031	-		MIT1002_01379	0.66	-3.1
1,531,031	-		MIT1002_01379	0.66	-1.8
1,531,097	-		MIT1002_01379	0.72	-2.7
1,531,102	-		MIT1002_01379	0.72	-0.6
1,531,121	+		MIT1002_01379	0.74	-2.3
1,531,198	-		MIT1002_01379	0.81	-2.4
1,531,270	+		MIT1002_01379	0.87	-1.0
1,531,271	-		MIT1002_01379	0.87	-2.0
1,531,372	+				+0.5
1,531,372	+				-0.4
1,531,372	+				-0.9
1,531,380	-				-4.2
1,531,380	-				-3.7
1,531,380	-				-3.9
1,531,380	-				-2.8
1,531,380	-				-3.5
1,531,380	-				-3.5
1,531,380	-				-1.0
1,531,380	-				-4.2
1,531,386	+				+1.4
1,531,404	-				-1.4
1,531,417	+				-2.1
1,531,456	+				-4.4
1,531,554	+		MIT1002_01380	0.10	-3.3
1,531,572	+		MIT1002_01380	0.12	-3.6
1,531,628	+		MIT1002_01380	0.16	-1.0
1,531,631	+		MIT1002_01380	0.16	-4.6
1,531,631	-		MIT1002_01380	0.16	-5.0
1,531,670	-		MIT1002_01380	0.19	-1.4
1,531,730	-		MIT1002_01380	0.23	-4.2
1,531,778	+		MIT1002_01380	0.27	-1.1
1,531,864	+		MIT1002_01380	0.33	-0.4
1,531,868	-		MIT1002_01380	0.33	-1.6
1,531,868	-		MIT1002_01380	0.33	-2.4
1,531,874	+		MIT1002_01380	0.34	-0.6
1,531,874	+		MIT1002_01380	0.34	-2.4
1,531,882	-		MIT1002_01380	0.34	-0.4
1,531,882	-		MIT1002_01380	0.34	-2.4
1,532,054	+		MIT1002_01380	0.47	-1.8
1,532,108	+		MIT1002_01380	0.51	-3.5
1,532,108	+		MIT1002_01380	0.51	-2.9
1,532,116	-		MIT1002_01380	0.52	-4.0
1,532,116	-		MIT1002_01380	0.52	-2.5
1,532,116	-		MIT1002_01380	0.52	-3.2
1,532,144	-		MIT1002_01380	0.54	-2.8
1,532,149	+		MIT1002_01380	0.54	-1.3
1,532,164	-		MIT1002_01380	0.55	-2.9
1,532,164	-		MIT1002_01380	0.55	-3.3
1,532,174	+		MIT1002_01380	0.56	-2.1
1,532,203	+		MIT1002_01380	0.58	+0.1
1,532,222	+		MIT1002_01380	0.59	-0.7
1,532,322	+		MIT1002_01380	0.67	-2.2
1,532,325	+		MIT1002_01380	0.67	-2.4
1,532,330	+		MIT1002_01380	0.67	-0.4
1,532,330	+		MIT1002_01380	0.67	-3.0
1,532,330	-		MIT1002_01380	0.67	-1.6
1,532,338	-		MIT1002_01380	0.68	-2.1
1,532,338	-		MIT1002_01380	0.68	-1.6
1,532,338	-		MIT1002_01380	0.68	-2.3
1,532,358	-		MIT1002_01380	0.69	-2.7
1,532,358	-		MIT1002_01380	0.69	-2.9