Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01378

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,527,936	-				-0.6
1,527,946	-				-0.3
1,527,985	-				+1.1
1,528,066	-				+0.5
1,528,099	-				+0.6
1,528,154	-				-0.1
1,528,154	-				+0.6
1,528,167	-				-0.2
1,528,217	+				-1.6
1,528,262	-				-0.0
1,528,356	+		MIT1002_01377	0.24	+0.5
1,528,374	-		MIT1002_01377	0.27	+1.2
1,528,374	-		MIT1002_01377	0.27	+0.2
1,528,448	+		MIT1002_01377	0.41	-0.1
1,528,488	-		MIT1002_01377	0.49	-0.7
1,528,488	-		MIT1002_01377	0.49	+0.2
1,528,505	+		MIT1002_01377	0.52	+1.4
1,528,562	+		MIT1002_01377	0.63	-2.1
1,528,582	-		MIT1002_01377	0.67	-0.1
1,528,755	-				-0.7
1,528,755	-				+0.0
1,528,830	-				+0.7
1,528,839	+				+2.4
1,528,846	+				+0.9
1,528,847	-				-0.9
1,528,873	+				-0.5
1,528,970	+				-3.4
1,529,029	-				-1.1
1,529,077	+		MIT1002_01378	0.11	-2.5
1,529,114	+		MIT1002_01378	0.14	+0.4
1,529,115	-		MIT1002_01378	0.14	-2.0
1,529,120	+		MIT1002_01378	0.15	-2.0
1,529,128	-		MIT1002_01378	0.15	-1.5
1,529,247	+		MIT1002_01378	0.24	-1.3
1,529,247	+		MIT1002_01378	0.24	-2.3
1,529,247	+		MIT1002_01378	0.24	-1.6
1,529,250	-		MIT1002_01378	0.24	-0.6
1,529,255	-		MIT1002_01378	0.25	-5.4
1,529,255	-		MIT1002_01378	0.25	-5.0
1,529,267	+		MIT1002_01378	0.26	-3.0
1,529,275	-		MIT1002_01378	0.26	-1.3
1,529,297	+		MIT1002_01378	0.28	-3.1
1,529,317	-		MIT1002_01378	0.29	-3.0
1,529,324	+		MIT1002_01378	0.30	-1.9
1,529,324	+		MIT1002_01378	0.30	+0.4
1,529,329	+		MIT1002_01378	0.30	-2.3
1,529,338	+		MIT1002_01378	0.31	-2.5
1,529,356	-		MIT1002_01378	0.32	-2.3
1,529,356	-		MIT1002_01378	0.32	-1.3
1,529,395	+		MIT1002_01378	0.35	-2.6
1,529,424	+		MIT1002_01378	0.38	-2.6
1,529,424	+		MIT1002_01378	0.38	-0.6
1,529,439	+		MIT1002_01378	0.39	-2.7
1,529,439	+		MIT1002_01378	0.39	-2.6
1,529,447	-		MIT1002_01378	0.39	-2.1
1,529,447	-		MIT1002_01378	0.39	-2.8
1,529,495	+		MIT1002_01378	0.43	-2.0
1,529,540	+		MIT1002_01378	0.46	-2.8
1,529,555	-		MIT1002_01378	0.47	-2.1
1,529,561	-		MIT1002_01378	0.48	-4.2
1,529,594	-		MIT1002_01378	0.50	-2.5
1,529,735	+		MIT1002_01378	0.61	-2.5
1,529,813	-		MIT1002_01378	0.67	-2.3
1,529,828	-		MIT1002_01378	0.68	+0.4
1,529,868	-		MIT1002_01378	0.71	-2.2
1,529,872	+		MIT1002_01378	0.71	-1.7
1,529,886	+		MIT1002_01378	0.72	-3.2
1,529,894	-		MIT1002_01378	0.73	-0.4
1,529,894	-		MIT1002_01378	0.73	-2.3
1,529,894	-		MIT1002_01378	0.73	-0.1
1,529,894	-		MIT1002_01378	0.73	-3.4
1,529,945	+		MIT1002_01378	0.77	-4.8
1,530,003	+		MIT1002_01378	0.81	-5.7
1,530,008	+		MIT1002_01378	0.82	-3.8
1,530,013	+		MIT1002_01378	0.82	-0.1
1,530,016	-		MIT1002_01378	0.82	-6.5
1,530,017	+		MIT1002_01378	0.82	-2.8
1,530,084	+		MIT1002_01378	0.87	-2.6
1,530,084	+		MIT1002_01378	0.87	-1.6
1,530,144	+				-4.3
1,530,145	+				-6.3
1,530,145	+				-0.4
1,530,145	+				-4.4
1,530,145	+				-3.6
1,530,151	-				-2.8
1,530,151	-				-2.2
1,530,153	-				-2.9
1,530,153	-				-1.6
1,530,153	-				-3.9
1,530,153	-				-0.7
1,530,153	-				-1.5
1,530,253	+				-2.0
1,530,253	+				-2.5
1,530,253	+				-5.6
1,530,261	-				-1.9
1,530,377	+				-3.9
1,530,525	-		MIT1002_01379	0.21	-3.1
1,530,660	-		MIT1002_01379	0.33	-0.9
1,530,695	+		MIT1002_01379	0.36	-1.4
1,530,695	-		MIT1002_01379	0.36	-3.3
1,530,710	+		MIT1002_01379	0.37	-4.0
1,530,710	-		MIT1002_01379	0.37	-3.3
1,530,727	-		MIT1002_01379	0.39	-0.7
1,530,782	+		MIT1002_01379	0.44	-3.6
1,530,782	+		MIT1002_01379	0.44	-2.4
1,530,830	+		MIT1002_01379	0.48	-3.5
1,530,833	-		MIT1002_01379	0.48	-3.6
1,530,838	-		MIT1002_01379	0.49	-3.8
1,530,880	-		MIT1002_01379	0.52	-3.7
1,530,909	+		MIT1002_01379	0.55	-2.1
1,530,932	+		MIT1002_01379	0.57	-1.9
1,530,932	+		MIT1002_01379	0.57	-3.4
1,530,957	+		MIT1002_01379	0.59	-1.6
1,530,957	+		MIT1002_01379	0.59	-1.4
1,530,967	+		MIT1002_01379	0.60	-0.9
1,530,967	+		MIT1002_01379	0.60	-6.9
1,530,967	+		MIT1002_01379	0.60	-2.4
1,530,967	+		MIT1002_01379	0.60	-2.6
1,530,967	+		MIT1002_01379	0.60	-6.8
1,530,967	+		MIT1002_01379	0.60	-3.2
1,530,975	-		MIT1002_01379	0.61	-7.7
1,530,975	-		MIT1002_01379	0.61	-1.1
1,530,975	-		MIT1002_01379	0.61	-3.5
1,530,975	-		MIT1002_01379	0.61	-2.5
1,530,975	-		MIT1002_01379	0.61	-2.7
1,531,031	-		MIT1002_01379	0.66	-3.1
1,531,031	-		MIT1002_01379	0.66	-1.8
1,531,097	-		MIT1002_01379	0.72	-2.7
1,531,102	-		MIT1002_01379	0.72	-0.6
1,531,121	+		MIT1002_01379	0.74	-2.3
1,531,198	-		MIT1002_01379	0.81	-2.4