Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01231

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,353,553	+		MIT1002_01230	0.22	-0.8
1,353,595	-		MIT1002_01230	0.26	+1.4
1,353,630	+		MIT1002_01230	0.28	+1.0
1,353,656	-		MIT1002_01230	0.31	+0.2
1,353,739	-		MIT1002_01230	0.37	-0.2
1,353,751	-		MIT1002_01230	0.38	+0.5
1,353,758	+		MIT1002_01230	0.39	+0.5
1,353,770	+		MIT1002_01230	0.40	+0.9
1,353,843	+		MIT1002_01230	0.46	+0.7
1,353,858	+		MIT1002_01230	0.47	-1.3
1,353,866	-		MIT1002_01230	0.48	+0.5
1,354,026	+		MIT1002_01230	0.61	-1.0
1,354,039	-		MIT1002_01230	0.62	+0.3
1,354,168	-		MIT1002_01230	0.73	+0.1
1,354,188	+		MIT1002_01230	0.74	+0.7
1,354,196	+		MIT1002_01230	0.75	-2.3
1,354,196	-		MIT1002_01230	0.75	-3.0
1,354,204	-		MIT1002_01230	0.76	+0.7
1,354,204	-		MIT1002_01230	0.76	-0.9
1,354,243	+		MIT1002_01230	0.79	+0.2
1,354,250	+		MIT1002_01230	0.79	-0.6
1,354,305	-		MIT1002_01230	0.84	-1.1
1,354,318	+		MIT1002_01230	0.85	+0.2
1,354,318	+		MIT1002_01230	0.85	-0.3
1,354,318	+		MIT1002_01230	0.85	-1.9
1,354,326	-		MIT1002_01230	0.86	+0.1
1,354,335	-		MIT1002_01230	0.86	+0.1
1,354,362	+		MIT1002_01230	0.89	-0.6
1,354,370	-		MIT1002_01230	0.89	+1.9
1,354,408	-				+0.5
1,354,411	+				+1.3
1,354,495	+				+0.2
1,354,540	-				-0.5
1,354,545	+				-0.3
1,354,564	+				+0.1
1,354,589	-				-0.1
1,354,668	-				+0.3
1,354,760	+		MIT1002_01231	0.15	-0.3
1,354,817	+		MIT1002_01231	0.19	-0.7
1,354,818	-		MIT1002_01231	0.19	+0.4
1,354,849	+		MIT1002_01231	0.21	-0.3
1,354,849	+		MIT1002_01231	0.21	+0.7
1,354,860	+		MIT1002_01231	0.21	+0.9
1,354,947	+		MIT1002_01231	0.27	-0.0
1,354,955	-		MIT1002_01231	0.28	+0.5
1,354,999	-		MIT1002_01231	0.30	-0.2
1,355,045	+		MIT1002_01231	0.33	-0.8
1,355,053	-		MIT1002_01231	0.34	-1.1
1,355,053	-		MIT1002_01231	0.34	-0.4
1,355,079	+		MIT1002_01231	0.36	+1.5
1,355,084	+		MIT1002_01231	0.36	-0.7
1,355,084	+		MIT1002_01231	0.36	-0.8
1,355,084	+		MIT1002_01231	0.36	-0.7
1,355,092	-		MIT1002_01231	0.36	-0.6
1,355,092	-		MIT1002_01231	0.36	+0.9
1,355,092	-		MIT1002_01231	0.36	-2.3
1,355,092	-		MIT1002_01231	0.36	+2.5
1,355,150	+		MIT1002_01231	0.40	-0.4
1,355,187	-		MIT1002_01231	0.43	+0.4
1,355,191	+		MIT1002_01231	0.43	+0.2
1,355,388	+		MIT1002_01231	0.55	-1.1
1,355,388	+		MIT1002_01231	0.55	+1.4
1,355,429	+		MIT1002_01231	0.58	-0.4
1,355,454	-		MIT1002_01231	0.60	-0.1
1,355,687	+		MIT1002_01231	0.75	-0.3
1,355,713	+		MIT1002_01231	0.76	-0.4
1,355,713	+		MIT1002_01231	0.76	+0.9
1,355,745	+		MIT1002_01231	0.79	+0.9
1,355,752	+		MIT1002_01231	0.79	+0.5
1,355,752	+		MIT1002_01231	0.79	-1.0
1,355,753	-		MIT1002_01231	0.79	-0.2
1,355,760	-		MIT1002_01231	0.80	+0.1
1,355,791	+		MIT1002_01231	0.82	-0.7
1,355,843	-		MIT1002_01231	0.85	-0.8
1,355,845	-		MIT1002_01231	0.85	+1.1
1,355,873	+		MIT1002_01231	0.87	+0.2
1,355,883	+		MIT1002_01231	0.87	+0.3
1,356,096	+				-1.7
1,356,108	-				-0.2
1,356,129	-				+1.6
1,356,133	+				+1.4
1,356,134	-				-0.5
1,356,141	-				+0.7
1,356,141	-				-1.2
1,356,141	-				+0.1
1,356,141	-				-0.5
1,356,141	-				-0.1
1,356,159	-				-1.0
1,356,166	+				-0.1
1,356,217	+		MIT1002_01232	0.11	+0.3
1,356,225	-		MIT1002_01232	0.11	+0.1
1,356,225	-		MIT1002_01232	0.11	+1.5
1,356,283	-		MIT1002_01232	0.16	-0.0
1,356,292	+		MIT1002_01232	0.17	+1.0
1,356,317	-		MIT1002_01232	0.19	-0.6
1,356,402	+		MIT1002_01232	0.25	+0.3
1,356,410	-		MIT1002_01232	0.26	+0.5
1,356,427	-		MIT1002_01232	0.27	-1.1
1,356,442	+		MIT1002_01232	0.28	+1.1
1,356,492	+		MIT1002_01232	0.32	+0.4
1,356,492	+		MIT1002_01232	0.32	-0.4
1,356,500	-		MIT1002_01232	0.33	-1.6
1,356,584	-		MIT1002_01232	0.39	-0.8
1,356,615	+		MIT1002_01232	0.42	-1.3
1,356,615	+		MIT1002_01232	0.42	+0.4
1,356,759	-		MIT1002_01232	0.53	+1.3
1,356,769	+		MIT1002_01232	0.54	+0.5
1,356,852	+		MIT1002_01232	0.60	-0.7
1,356,860	-		MIT1002_01232	0.61	+0.7
1,356,860	-		MIT1002_01232	0.61	+0.1
1,356,860	-		MIT1002_01232	0.61	+0.5
1,356,860	-		MIT1002_01232	0.61	-0.6
1,356,900	+		MIT1002_01232	0.64	-0.1
1,356,908	-		MIT1002_01232	0.64	-0.7
1,356,908	-		MIT1002_01232	0.64	-0.2
1,356,908	-		MIT1002_01232	0.64	+0.1
1,357,059	+		MIT1002_01232	0.76	+0.5
1,357,067	-		MIT1002_01232	0.77	-0.3