Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01222

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,345,460	+		MIT1002_01221	0.70	-1.2
1,345,498	-		MIT1002_01221	0.71	-0.2
1,345,628	+		MIT1002_01221	0.76	-1.1
1,345,635	-		MIT1002_01221	0.76	-1.8
1,345,701	+		MIT1002_01221	0.79	-1.2
1,345,704	-		MIT1002_01221	0.79	+0.3
1,345,709	-		MIT1002_01221	0.79	+1.5
1,345,771	+		MIT1002_01221	0.81	+0.4
1,345,835	-		MIT1002_01221	0.83	-0.1
1,345,844	+		MIT1002_01221	0.83	-1.2
1,345,858	-		MIT1002_01221	0.84	+0.4
1,345,940	+		MIT1002_01221	0.87	-0.5
1,345,940	+		MIT1002_01221	0.87	+1.2
1,345,940	+		MIT1002_01221	0.87	-0.6
1,345,940	+		MIT1002_01221	0.87	+0.4
1,345,948	-		MIT1002_01221	0.87	-0.3
1,345,948	-		MIT1002_01221	0.87	-0.1
1,345,948	-		MIT1002_01221	0.87	-0.9
1,345,984	+		MIT1002_01221	0.88	-0.9
1,345,990	+		MIT1002_01221	0.89	-0.1
1,346,124	+				-0.5
1,346,124	-				-0.8
1,346,251	+				+0.4
1,346,309	+				-0.1
1,346,309	+				-0.3
1,346,359	+				-0.8
1,346,371	+				+0.4
1,346,422	-				+0.5
1,346,548	-				-0.3
1,347,193	-		MIT1002_01222	0.50	+0.5
1,347,255	-		MIT1002_01222	0.54	+0.5
1,347,314	-		MIT1002_01222	0.57	-0.3
1,347,328	-		MIT1002_01222	0.58	-1.7
1,347,800	+		MIT1002_01222	0.88	+0.2
1,347,808	-		MIT1002_01222	0.88	-1.6
1,348,259	+		MIT1002_01223	0.31	+0.9
1,348,342	-		MIT1002_01223	0.44	-1.4
1,348,389	+		MIT1002_01223	0.51	-0.6
1,348,527	+		MIT1002_01223	0.73	-0.8
1,348,544	+		MIT1002_01223	0.76	+1.2
1,348,544	+		MIT1002_01223	0.76	-0.1
1,348,544	+		MIT1002_01223	0.76	-1.6
1,348,544	+		MIT1002_01223	0.76	+0.3
1,348,544	+		MIT1002_01223	0.76	+0.1
1,348,578	-		MIT1002_01223	0.81	-2.2
1,348,599	-		MIT1002_01223	0.84	-0.5
1,348,632	+		MIT1002_01223	0.89	+1.2
1,348,635	-		MIT1002_01223	0.90	+0.4
1,348,642	+				-1.6
1,348,642	+				+1.0
1,348,643	+				-1.8
1,348,643	+				+0.1
1,348,650	-				-0.8
1,348,650	-				-2.5
1,348,962	-				-0.4
1,348,987	-				-1.1
1,348,993	-				-3.0