Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01123

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01122 and MIT1002_01123 are separated by 253 nucleotidesMIT1002_01123 and MIT1002_01124 are separated by 73 nucleotidesMIT1002_01124 and MIT1002_01125 are separated by 228 nucleotides MIT1002_01122: MIT1002_01122 - Bicarbonate transporter BicA, at 1,231,708 to 1,233,345 _01122 MIT1002_01123: MIT1002_01123 - TonB-dependent siderophore receptor, at 1,233,599 to 1,236,022 _01123 MIT1002_01124: MIT1002_01124 - Fatty acid metabolism regulator protein, at 1,236,096 to 1,236,671 _01124 MIT1002_01125: MIT1002_01125 - Neutral endopeptidase, at 1,236,900 to 1,238,975 _01125 Position (kb) 1233 1234 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1232.610 kb on + strand, within MIT1002_01122at 1232.626 kb on + strand, within MIT1002_01122at 1232.644 kb on - strand, within MIT1002_01122at 1232.663 kb on + strand, within MIT1002_01122at 1232.671 kb on - strand, within MIT1002_01122at 1232.757 kb on - strand, within MIT1002_01122at 1232.866 kb on + strand, within MIT1002_01122at 1232.871 kb on + strand, within MIT1002_01122at 1232.947 kb on - strand, within MIT1002_01122at 1232.974 kb on - strand, within MIT1002_01122at 1232.988 kb on - strand, within MIT1002_01122at 1233.011 kb on + strand, within MIT1002_01122at 1233.019 kb on - strand, within MIT1002_01122at 1233.143 kb on + strand, within MIT1002_01122at 1233.171 kb on - strand, within MIT1002_01122at 1233.182 kb on - strandat 1233.210 kb on + strandat 1233.257 kb on - strandat 1233.294 kb on + strandat 1233.361 kb on + strandat 1233.375 kb on + strandat 1233.385 kb on + strandat 1233.393 kb on - strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.447 kb on + strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.455 kb on - strandat 1233.554 kb on + strandat 1233.562 kb on - strandat 1233.666 kb on - strandat 1233.703 kb on - strandat 1233.733 kb on + strandat 1233.788 kb on + strandat 1233.796 kb on - strandat 1233.798 kb on - strandat 1233.812 kb on + strandat 1233.820 kb on - strandat 1233.820 kb on - strandat 1233.820 kb on - strandat 1233.870 kb on + strand, within MIT1002_01123at 1233.870 kb on + strand, within MIT1002_01123at 1233.933 kb on + strand, within MIT1002_01123at 1233.935 kb on + strand, within MIT1002_01123at 1233.960 kb on - strand, within MIT1002_01123at 1234.061 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.067 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.095 kb on + strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.103 kb on - strand, within MIT1002_01123at 1234.112 kb on + strand, within MIT1002_01123at 1234.174 kb on + strand, within MIT1002_01123at 1234.236 kb on + strand, within MIT1002_01123at 1234.236 kb on + strand, within MIT1002_01123at 1234.244 kb on - strand, within MIT1002_01123at 1234.255 kb on - strand, within MIT1002_01123at 1234.264 kb on + strand, within MIT1002_01123at 1234.325 kb on + strand, within MIT1002_01123at 1234.326 kb on - strand, within MIT1002_01123at 1234.333 kb on + strand, within MIT1002_01123at 1234.426 kb on + strand, within MIT1002_01123at 1234.470 kb on + strand, within MIT1002_01123at 1234.470 kb on + strand, within MIT1002_01123at 1234.470 kb on + strand, within MIT1002_01123at 1234.470 kb on + strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.478 kb on - strand, within MIT1002_01123at 1234.489 kb on + strand, within MIT1002_01123at 1234.583 kb on + strand, within MIT1002_01123at 1234.583 kb on + strand, within MIT1002_01123at 1234.590 kb on - strand, within MIT1002_01123at 1234.591 kb on - strand, within MIT1002_01123at 1234.593 kb on + strand, within MIT1002_01123at 1234.662 kb on + strand, within MIT1002_01123at 1234.665 kb on - strand, within MIT1002_01123at 1234.718 kb on - strand, within MIT1002_01123at 1234.729 kb on - strand, within MIT1002_01123at 1234.744 kb on + strand, within MIT1002_01123at 1234.780 kb on - strand, within MIT1002_01123at 1234.879 kb on + strand, within MIT1002_01123at 1234.931 kb on + strand, within MIT1002_01123at 1234.999 kb on - strand, within MIT1002_01123at 1235.083 kb on - strand, within MIT1002_01123at 1235.083 kb on - strand, within MIT1002_01123at 1235.142 kb on + strand, within MIT1002_01123at 1235.161 kb on - strand, within MIT1002_01123at 1235.186 kb on + strand, within MIT1002_01123at 1235.282 kb on + strand, within MIT1002_01123at 1235.390 kb on - strand, within MIT1002_01123at 1235.447 kb on + strand, within MIT1002_01123at 1235.447 kb on - strand, within MIT1002_01123at 1235.448 kb on + strand, within MIT1002_01123at 1235.455 kb on - strand, within MIT1002_01123at 1235.456 kb on - strand, within MIT1002_01123at 1235.456 kb on - strand, within MIT1002_01123at 1235.456 kb on - strand, within MIT1002_01123at 1235.496 kb on + strand, within MIT1002_01123at 1235.504 kb on - strand, within MIT1002_01123at 1235.622 kb on + strand, within MIT1002_01123at 1235.716 kb on + strand, within MIT1002_01123at 1235.771 kb on - strand, within MIT1002_01123at 1235.822 kb on + strandat 1235.835 kb on + strandat 1235.870 kb on + strandat 1235.908 kb on + strandat 1235.953 kb on - strandat 1235.993 kb on + strandat 1236.001 kb on - strandat 1236.008 kb on + strandat 1236.016 kb on - strandat 1236.016 kb on - strandat 1236.105 kb on - strandat 1236.112 kb on - strandat 1236.183 kb on + strand, within MIT1002_01124at 1236.216 kb on - strand, within MIT1002_01124at 1236.235 kb on - strand, within MIT1002_01124at 1236.415 kb on - strand, within MIT1002_01124at 1236.435 kb on + strand, within MIT1002_01124at 1236.452 kb on + strand, within MIT1002_01124at 1236.454 kb on + strand, within MIT1002_01124at 1236.454 kb on + strand, within MIT1002_01124at 1236.454 kb on + strand, within MIT1002_01124at 1236.454 kb on + strand, within MIT1002_01124at 1236.462 kb on - strand, within MIT1002_01124at 1236.468 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.506 kb on + strand, within MIT1002_01124at 1236.511 kb on + strand, within MIT1002_01124at 1236.519 kb on - strand, within MIT1002_01124at 1236.519 kb on - strand, within MIT1002_01124at 1236.519 kb on - strand, within MIT1002_01124at 1236.521 kb on + strand, within MIT1002_01124at 1236.545 kb on - strand, within MIT1002_01124at 1236.549 kb on + strand, within MIT1002_01124at 1236.725 kb on + strandat 1236.725 kb on + strandat 1236.757 kb on + strandat 1236.828 kb on - strandat 1236.829 kb on - strandat 1236.845 kb on + strandat 1236.883 kb on + strandat 1236.891 kb on - strandat 1236.928 kb on - strandat 1236.938 kb on + strandat 1236.946 kb on - strandat 1237.003 kb on + strandat 1237.019 kb on + strandat 1237.019 kb on + strandat 1237.020 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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1,232,610 + MIT1002_01122 0.55 -0.3
1,232,626 + MIT1002_01122 0.56 -0.2
1,232,644 - MIT1002_01122 0.57 -0.2
1,232,663 + MIT1002_01122 0.58 +1.7
1,232,671 - MIT1002_01122 0.59 +0.8
1,232,757 - MIT1002_01122 0.64 +6.6
1,232,866 + MIT1002_01122 0.71 +0.6
1,232,871 + MIT1002_01122 0.71 +1.3
1,232,947 - MIT1002_01122 0.76 +1.0
1,232,974 - MIT1002_01122 0.77 -1.4
1,232,988 - MIT1002_01122 0.78 +0.7
1,233,011 + MIT1002_01122 0.80 +0.3
1,233,019 - MIT1002_01122 0.80 +0.6
1,233,143 + MIT1002_01122 0.88 +2.5
1,233,171 - MIT1002_01122 0.89 -0.8
1,233,182 - +2.0
1,233,210 + -1.3
1,233,257 - +0.5
1,233,294 + +0.2
1,233,361 + +0.4
1,233,375 + -0.0
1,233,385 + -0.4
1,233,393 - -0.2
1,233,447 + +0.2
1,233,447 + +0.4
1,233,447 + -1.4
1,233,447 + +0.2
1,233,455 - -0.8
1,233,455 - +2.8
1,233,455 - +0.3
1,233,455 - -0.4
1,233,554 + +0.5
1,233,562 - -3.0
1,233,666 - +0.2
1,233,703 - +1.3
1,233,733 + -0.5
1,233,788 + -1.5
1,233,796 - -0.3
1,233,798 - -1.5
1,233,812 + -0.6
1,233,820 - +1.0
1,233,820 - +1.4
1,233,820 - -0.0
1,233,870 + MIT1002_01123 0.11 +0.1
1,233,870 + MIT1002_01123 0.11 +0.0
1,233,933 + MIT1002_01123 0.14 -1.1
1,233,935 + MIT1002_01123 0.14 -1.0
1,233,960 - MIT1002_01123 0.15 -0.6
1,234,061 + MIT1002_01123 0.19 +0.5
1,234,067 + MIT1002_01123 0.19 -1.1
1,234,067 + MIT1002_01123 0.19 -0.0
1,234,067 + MIT1002_01123 0.19 -2.1
1,234,067 + MIT1002_01123 0.19 +1.5
1,234,095 + MIT1002_01123 0.20 -0.8
1,234,095 + MIT1002_01123 0.20 -0.0
1,234,095 + MIT1002_01123 0.20 -0.5
1,234,103 - MIT1002_01123 0.21 -1.6
1,234,103 - MIT1002_01123 0.21 +0.7
1,234,103 - MIT1002_01123 0.21 -0.5
1,234,103 - MIT1002_01123 0.21 +0.2
1,234,103 - MIT1002_01123 0.21 +0.6
1,234,112 + MIT1002_01123 0.21 +0.4
1,234,174 + MIT1002_01123 0.24 -0.5
1,234,236 + MIT1002_01123 0.26 -0.2
1,234,236 + MIT1002_01123 0.26 -1.0
1,234,244 - MIT1002_01123 0.27 -0.2
1,234,255 - MIT1002_01123 0.27 +0.8
1,234,264 + MIT1002_01123 0.27 -0.0
1,234,325 + MIT1002_01123 0.30 -0.0
1,234,326 - MIT1002_01123 0.30 -0.6
1,234,333 + MIT1002_01123 0.30 -0.3
1,234,426 + MIT1002_01123 0.34 -0.2
1,234,470 + MIT1002_01123 0.36 -1.3
1,234,470 + MIT1002_01123 0.36 -0.3
1,234,470 + MIT1002_01123 0.36 -0.3
1,234,470 + MIT1002_01123 0.36 -0.6
1,234,478 - MIT1002_01123 0.36 -0.6
1,234,478 - MIT1002_01123 0.36 -0.5
1,234,478 - MIT1002_01123 0.36 -1.0
1,234,478 - MIT1002_01123 0.36 -0.3
1,234,478 - MIT1002_01123 0.36 -0.2
1,234,478 - MIT1002_01123 0.36 -0.1
1,234,478 - MIT1002_01123 0.36 -2.8
1,234,478 - MIT1002_01123 0.36 +1.9
1,234,478 - MIT1002_01123 0.36 +0.4
1,234,489 + MIT1002_01123 0.37 -0.3
1,234,583 + MIT1002_01123 0.41 -0.9
1,234,583 + MIT1002_01123 0.41 -0.5
1,234,590 - MIT1002_01123 0.41 -0.3
1,234,591 - MIT1002_01123 0.41 -0.2
1,234,593 + MIT1002_01123 0.41 +0.8
1,234,662 + MIT1002_01123 0.44 +0.5
1,234,665 - MIT1002_01123 0.44 -0.5
1,234,718 - MIT1002_01123 0.46 +1.1
1,234,729 - MIT1002_01123 0.47 +0.4
1,234,744 + MIT1002_01123 0.47 -0.2
1,234,780 - MIT1002_01123 0.49 +1.3
1,234,879 + MIT1002_01123 0.53 -1.2
1,234,931 + MIT1002_01123 0.55 +0.2
1,234,999 - MIT1002_01123 0.58 -1.2
1,235,083 - MIT1002_01123 0.61 -2.8
1,235,083 - MIT1002_01123 0.61 -0.9
1,235,142 + MIT1002_01123 0.64 -0.6
1,235,161 - MIT1002_01123 0.64 -0.6
1,235,186 + MIT1002_01123 0.65 -0.6
1,235,282 + MIT1002_01123 0.69 -0.5
1,235,390 - MIT1002_01123 0.74 -2.4
1,235,447 + MIT1002_01123 0.76 +1.5
1,235,447 - MIT1002_01123 0.76 -0.5
1,235,448 + MIT1002_01123 0.76 -0.4
1,235,455 - MIT1002_01123 0.77 +0.2
1,235,456 - MIT1002_01123 0.77 +1.3
1,235,456 - MIT1002_01123 0.77 -0.7
1,235,456 - MIT1002_01123 0.77 +0.6
1,235,496 + MIT1002_01123 0.78 -1.7
1,235,504 - MIT1002_01123 0.79 -1.8
1,235,622 + MIT1002_01123 0.83 -0.3
1,235,716 + MIT1002_01123 0.87 -0.5
1,235,771 - MIT1002_01123 0.90 +0.5
1,235,822 + +1.3
1,235,835 + +0.0
1,235,870 + +2.0
1,235,908 + +1.1
1,235,953 - -1.5
1,235,993 + +2.3
1,236,001 - -0.8
1,236,008 + +0.2
1,236,016 - +1.0
1,236,016 - +0.2
1,236,105 - -1.5
1,236,112 - -0.4
1,236,183 + MIT1002_01124 0.15 -0.3
1,236,216 - MIT1002_01124 0.21 -0.5
1,236,235 - MIT1002_01124 0.24 -1.4
1,236,415 - MIT1002_01124 0.55 +1.0
1,236,435 + MIT1002_01124 0.59 -0.3
1,236,452 + MIT1002_01124 0.62 -0.5
1,236,454 + MIT1002_01124 0.62 -1.8
1,236,454 + MIT1002_01124 0.62 -2.3
1,236,454 + MIT1002_01124 0.62 +0.5
1,236,454 + MIT1002_01124 0.62 -1.2
1,236,462 - MIT1002_01124 0.64 +1.3
1,236,468 + MIT1002_01124 0.65 -0.6
1,236,506 + MIT1002_01124 0.71 -0.8
1,236,506 + MIT1002_01124 0.71 +1.0
1,236,506 + MIT1002_01124 0.71 +0.1
1,236,506 + MIT1002_01124 0.71 +0.5
1,236,506 + MIT1002_01124 0.71 -0.0
1,236,506 + MIT1002_01124 0.71 -1.0
1,236,511 + MIT1002_01124 0.72 -0.7
1,236,519 - MIT1002_01124 0.73 -1.3
1,236,519 - MIT1002_01124 0.73 +0.2
1,236,519 - MIT1002_01124 0.73 -1.6
1,236,521 + MIT1002_01124 0.74 +0.1
1,236,545 - MIT1002_01124 0.78 -1.3
1,236,549 + MIT1002_01124 0.79 +0.3
1,236,725 + +0.3
1,236,725 + +0.2
1,236,757 + +1.7
1,236,828 - +0.2
1,236,829 - +1.2
1,236,845 + +0.8
1,236,883 + -1.9
1,236,891 - +0.8
1,236,928 - -0.5
1,236,938 + -1.3
1,236,946 - +0.2
1,237,003 + -0.3
1,237,019 + +0.4
1,237,019 + +0.7
1,237,020 + +0.9

Or see this region's nucleotide sequence